RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PDE5AO76074 875 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CYLC2Q14093 348 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 SHROOM1Q2M3G4 852 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 ZRANB3Q5FWF4 1079 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 KLHL17Q6TDP4 642 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 POLNQ7Z5Q5 900 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CATIPQ7Z7H3 387 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 STK32CQ86UX6 486 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 MICU2Q8IYU8 434 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 SMYD3Q9H7B4 428 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC194A0A1B0GVG4 234 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 BCL10O95999 233 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 IFNA8P32881 189 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 UBXN1Q04323 297 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 LONRF3Q496Y0 759 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF483Q8TF39 744 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 EHD1Q9H4M9 534 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 VAT1LQ9HCJ6 419 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 ARHGEF38Q9NXL2 777 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 PYGBP11216 843 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 NPR2P20594 1047 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 RCN1Q15293 331 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 IYDQ6PHW0 289 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 MMS22LQ6ZRQ5 1243 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC80Q76M96 950 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 SYNPOQ8N3V7 929 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 SIPA1Q96FS4 1042 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC37BQ96QE4 947 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 FBXO9Q9UK97 447 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 MORC2Q9Y6X9 1032 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC78A2IDD5 438 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 RPN2P04844 631 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 MDM2Q00987 491 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 MMRN1Q13201 1228 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM45BPQ6NSW5 357 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 RERGLQ9H628 205 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CTNNAL1Q9UBT7 734 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC169A6NNP5 214 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SASH1O94885 1247 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NCAM1P13591 858 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 STOMP27105 288 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 IL12RB1P42701 662 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 YWHAHQ04917 246 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC9C1Q4G0N8 1177 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 RSBN1Q5VWQ0 802 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC8BQ6P9F7 803 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 PRR23CQ6ZRP0 262 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC105Q8IYK2 499 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 C20orf96Q9NUD7 363 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NSMCE4AQ9NXX6 385 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 GGA1Q9UJY5 639 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 POLIQ9UNA4 740 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 PTPN22Q9Y2R2 807 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SYNJ1O43426 1573 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 AGRPO00253 132 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 AKAP5P24588 427 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 IFNAR2P48551 515 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 DHX9Q08211 1270 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 STX5Q13190 355 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 FBXW10Q5XX13 1052 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TBC1D19Q8N5T2 526 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 PHAXQ9H814 394 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 EHMT1Q9H9B1 1298 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 KRT84Q9NSB2 600 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 HACD3Q9P035 362 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 ZBED9Q6R2W3 1325 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SNX2O60749 519 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 GYS1P13807 737 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 FGFR2P21802 821 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 COX10Q12887 443 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 DRP2Q13474 957 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 ARSHQ5FYA8 562 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC185Q8N715 623 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 ATP6V1C2Q8NEY4 427 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM172AQ8WUF8 416 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TSPAN18Q96SJ8 248 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NOL6Q9H6R4 1146 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF277Q9NRM2 450 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 MOSPD1Q9UJG1 213 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TMEM247A6NEH6 219 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 A6NNZ2 444 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 YWHAQP27348 245 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TNNI2P48788 182 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 GPC3P51654 580 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TUBB8Q3ZCM7 444 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 EFCAB2Q5VUJ9 269 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 CRACR2BQ8N4Y2 399 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NAPBQ9H115 298 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 POLR1BQ9H9Y6 1135 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TSPAN4O14817 238 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 RUNX1T1Q06455 604 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NFIAQ12857 509 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 PWP1Q13610 501 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 KIF19Q2TAC6 998 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 WDR44Q5JSH3 913 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC70Q7Z2Q7 622 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 RAB44Q7Z6P3 723 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC26A7Q8TE54 656 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TP53INP1Q96A56 240 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 NUDCD1Q96RS6 583 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms