RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 EHHADHQ08426 723 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 PARP10Q53GL7 1025 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 PLA2G4DQ86XP0 818 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 CEP70Q8NHQ1 597 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 UBE2Q2Q8WVN8 375 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 ATP8A2Q9NTI2 1148 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 WARS2Q9UGM6 360 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 UBXN8O00124 270 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MYO1EQ12965 1108 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MKRN3Q13064 507 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 KRT26Q7Z3Y9 468 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 BCAS4Q8TDM0 211 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 IGF1RP08069 1367 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MOCS3O95396 460 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 APBA3O96018 575 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 PAMP19021 973 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 OSBPP22059 807 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 CIITAP33076 1130 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 AARS2Q5JTZ9 985 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MIS18BP1Q6P0N0 1132 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 GJA10Q969M2 543 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 ENOX1Q8TC92 643 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 ANGPTL2Q9UKU9 493 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 SH3TC1Q8TE82 1336 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MED7O43513 233 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 ADAM9Q13443 819 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MAGOHBQ96A72 148 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 SKIP12755 728 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 FBXO11Q86XK2 927 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 TCP11Q8WWU5 503 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 DCAF5Q96JK2 942 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 OSTNP61366 133 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 LBRQ14739 615 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 GRAMD1BQ3KR37 738 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 TEX9Q8N6V9 391 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 DHX38Q92620 1227 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 SARS2Q9NP81 518 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 RBBP7Q16576 425 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 PLEKHM3Q6ZWE6 761 aa12.29□□□□□ -0.44
PTPN4-201ENST00000263708 LRRN2O75325 713 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 KRT8P05787 483 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 MRPL28Q13084 256 aaKnown RBP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 KCTD2Q14681 263 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 EXOC3L4Q17RC7 722 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TCP11X2Q5H9J9 407 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SUN2Q9UH99 717 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 NDUFB9Q9Y6M9 179 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 ORC4O43929 436 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 MRFAP1L1Q96HT8 127 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 LRRC37BQ96QE4 947 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TRPV6Q9H1D0 765 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SERTAD1Q9UHV2 236 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SNAPC4Q5SXM2 1469 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TRIM37O94972 964 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TAC1P20366 129 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 ARL13BQ3SXY8 428 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SH3KBP1Q96B97 665 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 FTOQ9C0B1 505 aaKnown RBP eCLIP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SPATS2LQ9NUQ6 558 aaKnown RBP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SELENONQ9NZV5 590 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 NCOA1Q15788 1441 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 CARSP49589 748 aaKnown RBP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 CCDC90BQ9GZT6 254 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 HPCAL4Q9UM19 191 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 ADGRF5Q8IZF2 1346 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 PRPSAP2O60256 369 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 CYP4A11Q02928 519 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 OCA2Q04671 838 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 E2F5Q15329 346 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 HIPK4Q8NE63 616 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 OR8K1Q8NGG5 319 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SLC26A7Q8TE54 656 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 GPKOWQ92917 476 aaPredicted RBP eCLIP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 MT-ND3P03897 115 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TRIML2Q8N7C3 387 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 PHF21AQ96BD5 680 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 MROH5Q6ZUA9 1318 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 CDO1Q16878 200 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 TBC1D22AQ8WUA7 517 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 COL4A3BPQ9Y5P4 624 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 ASXL1Q8IXJ9 1541 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 SCAF11Q99590 1463 aaKnown RBP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 WASHC5Q12768 1159 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 FAM98CQ17RN3 349 aaKnown RBP12.28□□□□□ -0.44
PTPN4-201ENST00000263708 CATSPER3Q86XQ3 398 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 IQGAP2Q13576 1575 aa12.28□□□□□ -0.44
PTPN4-201ENST00000263708 GRIN1Q05586 938 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 AOC3Q16853 763 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 ODR4Q5SWX8 454 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 SCARA5Q6ZMJ2 495 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 STX19Q8N4C7 294 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 FAM227BQ96M60 508 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 HEXIM2Q96MH2 286 aaKnown RBP12.27□□□□□ -0.44
PTPN4-201ENST00000263708 FSD1LQ9BXM9 530 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 NXF1Q9UBU9 619 aaKnown RBP12.27□□□□□ -0.44
PTPN4-201ENST00000263708 SRGAP2CP0DJJ0 459 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 PCYT1AP49585 367 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 BPIFB4P59827 614 aa12.27□□□□□ -0.44
PTPN4-201ENST00000263708 PSMC1P62191 440 aaKnown RBP12.27□□□□□ -0.44
PTPN4-201ENST00000263708 KRT40Q6A162 431 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms