RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 ATAD5Q96QE3 1844 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 USP17L10C9JJH3 530 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 TULP2O00295 520 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 NCK2O43639 380 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 TAL1P17542 331 aaPredicted RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 TNNI2P48788 182 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 KCTD1Q719H9 257 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 GUF1Q8N442 669 aaKnown RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 SNX29Q8TEQ0 813 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 EXOC4Q96A65 974 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 MTMR8Q96EF0 704 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 NUP58Q9BVL2 599 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 HPCAL4Q9UM19 191 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 POTEB2H3BUK9 544 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 ATP2C2O75185 946 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 ATP2B4P23634 1241 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 CXCR5P32302 372 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 KRT83P78385 493 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 GFPT1Q06210 699 aaPredicted RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 SOGA3Q5TF21 947 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 NFRKBQ6P4R8 1299 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 KCNQ5Q9NR82 932 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 FEZ2Q9UHY8 353 aaPredicted RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 PCDHA13Q9Y5I0 950 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 PVALEFA0A1B0GWK0 134 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 FAM196BA6NMK8 535 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 KRT86O43790 486 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 IDEP14735 1019 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 MNAT1P51948 309 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 ANKRD13CQ8N6S4 541 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 CALML4Q96GE6 196 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 DEF6Q9H4E7 631 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 RIC8AQ9NPQ8 531 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 STK17AQ9UEE5 414 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 DMGDHQ9UI17 866 aaKnown RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 SNX12Q9UMY4 172 aa11.22□□□□□ -0.61
COPB1-201ENST00000249923 ATF5Q9Y2D1 282 aaPredicted RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 RRP15Q9Y3B9 282 aaKnown RBP11.22□□□□□ -0.61
COPB1-201ENST00000249923 RIMBP2O15034 1052 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 CYLC1P35663 651 aaPredicted RBP11.21□□□□□ -0.61
COPB1-201ENST00000249923 COASYQ13057 564 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 DPY19L2P1Q6NXN4 242 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 ZNF287Q9HBT7 754 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 PSD3Q9NYI0 1048 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 TBC1D7Q9P0N9 293 aa11.21□□□□□ -0.61
COPB1-201ENST00000249923 COL11A2P13942 1736 aaPredicted RBP11.21□□□□□ -0.61
COPB1-201ENST00000249923 USP17L15C9J2P7 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L13C9JLJ4 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L11C9JVI0 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L18D6R9N7 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L22D6RA61 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L17D6RBQ6 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L19D6RCP7 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L20D6RJB6 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 E9PMD0 336 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 POLRMTO00411 1230 aaKnown RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 HOXA10P31260 410 aaPredicted RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 SLC1A4P43007 532 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 SCNN1DP51172 638 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L24Q0WX57 530 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 PDIA5Q14554 519 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 MAN2A1Q16706 1144 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 PPP4R3AQ6IN85 833 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP17L6PQ6QN14 398 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 IFIH1Q9BYX4 1025 aaKnown RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 ANO9A1A5B4 782 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 KLRG2A4D1S0 409 aaPredicted RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 IPO7O95373 1038 aaKnown RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 STAT3P40763 770 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 AARSP49588 968 aaKnown RBP eCLIP11.21□□□□□ -0.624e-7■□□□□ 11.3
COPB1-201ENST00000249923 CASP5P51878 434 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 ORC2Q13416 577 aaPredicted RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 ASPRV1Q53RT3 343 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 ARSHQ5FYA8 562 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 RRAGAQ7L523 313 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 SECISBP2LQ93073 1101 aaKnown RBP11.21□□□□□ -0.62
COPB1-201ENST00000249923 CCDC42Q96M95 316 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 CRACR2AQ9BSW2 395 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 USP21Q9UK80 565 aa11.21□□□□□ -0.62
COPB1-201ENST00000249923 LIG3P49916 1009 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 CCDC96Q2M329 555 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 MUM1L1Q5H9M0 696 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 ZNF572Q7Z3I7 529 aaPredicted RBP11.2□□□□□ -0.62
COPB1-201ENST00000249923 FAM114A1Q8IWE2 563 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 LRRC1Q9BTT6 524 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 TLR10Q9BXR5 811 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 MMRN2Q9H8L6 949 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 JADE2Q9NQC1 790 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 DDX25Q9UHL0 483 aaKnown RBP11.2□□□□□ -0.62
COPB1-201ENST00000249923 SCN9AQ15858 1988 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 PNMA6FA0A0J9YX94 578 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 POTEB3A0JP26 581 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 POTECB2RU33 542 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 ZEB2O60315 1214 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 POLD1P28340 1107 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 AMPD3Q01432 767 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 SPIRE1Q08AE8 756 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 KCTD19Q17RG1 926 aaPredicted RBP11.2□□□□□ -0.62
COPB1-201ENST00000249923 APOBEC3HQ6NTF7 200 aaKnown RBP11.2□□□□□ -0.62
COPB1-201ENST00000249923 PDXDC1Q6P996 788 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms