RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 EEPD1Q7L9B9 569 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 USP6NLQ92738 828 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 SMARCE1Q969G3 411 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 VTI1AQ96AJ9 217 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 MAML3Q96JK9 1138 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 SLC38A10Q9HBR0 1119 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 FANCLQ9NW38 375 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS4B-201ENST00000238497 V9GYY5 206 aaPredicted RBP9.76□□□□□ -0.85
VPS4B-201ENST00000238497 SYN1P17600 705 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 KIF5BP33176 963 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 COPB2P35606 906 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 IQCB1Q15051 598 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 SEC23AQ15436 765 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 INF2Q27J81 1249 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 USH1GQ495M9 461 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 JAKMIP3Q5VZ66 844 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 ZBTB9Q96C00 473 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 TRERF1Q96PN7 1200 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 NAPAP54920 295 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 TROAPQ12815 778 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 LETM2Q2VYF4 491 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 TTC38Q5R3I4 469 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 SYDE2Q5VT97 1194 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 CHRDL2Q6WN34 429 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 GPIHBP1Q8IV16 184 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 GMCL1Q96IK5 515 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 TINF2Q9BSI4 451 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 DDX20Q9UHI6 824 aaKnown RBP9.76□□□□□ -0.85
VPS4B-201ENST00000238497 HOOK1Q9UJC3 728 aaKnown RBP9.76□□□□□ -0.85
VPS4B-201ENST00000238497 A0A1W2PQ27 194 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 A0A1W2PQ64 194 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 A0A1W2PQD8 194 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 CUTAO60888 179 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 TNNT1P13805 278 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 KRBA2Q6ZNG9 492 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 DHX40Q8IX18 779 aaKnown RBP9.75□□□□□ -0.85
VPS4B-201ENST00000238497 LENG1Q96BZ8 264 aaPredicted RBP9.75□□□□□ -0.85
VPS4B-201ENST00000238497 C11orf49Q9H6J7 331 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 ACAD9Q9H845 621 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 FBXO40Q9UH90 709 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 MGAMO43451 1857 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 KLRF2D3W0D1 207 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 ZNF500O60304 480 aaPredicted RBP9.75□□□□□ -0.85
VPS4B-201ENST00000238497 HOXC6P09630 235 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 SCG2P13521 617 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 DCAF4Q8WV16 495 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 SYMPKQ92797 1274 aaKnown RBP9.75□□□□□ -0.85
VPS4B-201ENST00000238497 CEP131Q9UPN4 1083 aa9.75□□□□□ -0.85
VPS4B-201ENST00000238497 PP2D1A8MPX8 630 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PGK1P00558 417 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 RARBP10826 455 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 CALML3P27482 149 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 NLRP12P59046 1061 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 CNTN2Q02246 1040 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 POSTNQ15063 836 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PTPAQ15257 358 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 MAP3K21Q5TCX8 1036 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 TICAM2Q86XR7 235 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 LAMB1P07942 1786 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 DNAH12Q6ZR08 3092 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 A0A0U1RQG5 324 aaPredicted RBP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 KBTBD13C9JR72 458 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 MSCO60682 206 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PDHBP11177 359 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PCP11498 1178 aaKnown RBP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 U2AF2P26368 475 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 FANCCQ00597 558 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 ABRAQ8N0Z2 381 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 TRPV1Q8NER1 839 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 REPS2Q8NFH8 660 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 RNF26Q9BY78 433 aaPredicted RBP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 ADAMTS5Q9UNA0 930 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 SMTNL1A8MU46 457 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 SSBP05455 408 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 SFPQP23246 707 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PKN1Q16512 942 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 TMTC3Q6ZXV5 915 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 TRMT1LQ7Z2T5 733 aaKnown RBP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 ARRDC4Q8NCT1 418 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 CHST13Q8NET6 341 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 MAP3K14Q99558 947 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 PRDM5Q9NQX1 630 aaPredicted RBP9.74□□□□□ -0.85
VPS4B-201ENST00000238497 ATP11BQ9Y2G3 1177 aa9.74□□□□□ -0.85
VPS4B-201ENST00000238497 WDR19Q8NEZ3 1342 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 SEPT4O43236 478 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 NRDCO43847 1150 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CALM1P0DP23 149 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CALM2P0DP24 149 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CALM3P0DP25 149 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CCDC34Q96HJ3 373 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CRISPLD2Q9H0B8 497 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 XPNPEP3Q9NQH7 507 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 SEC63Q9UGP8 760 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 NFE2L3Q9Y4A8 694 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 PLIN4Q96Q06 1357 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 USP27XA6NNY8 438 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 PARP1P09874 1014 aaKnown RBP9.73□□□□□ -0.85
VPS4B-201ENST00000238497 FDX1P10109 184 aa9.73□□□□□ -0.85
VPS4B-201ENST00000238497 CHMP4BP1P59074 171 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms