RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 IRS2Q9Y4H2 1338 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 HNRNPDLO14979 420 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TLL1O43897 1013 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SDSP20132 328 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 GBP1P32455 592 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 BPIFB4P59827 614 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TUBB4BP68371 445 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CTDSPL2Q05D32 466 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 MAP2K5Q13163 448 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 LAMC2Q13753 1193 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CHST13Q8NET6 341 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 C2orf40Q9H1Z8 148 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 STN1Q9H668 368 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 NMRK2Q9NPI5 230 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 RTN4Q9NQC3 1192 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CD163L1Q9NR16 1453 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 NEMFO60524 1076 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 MECOMQ03112 1051 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SPAG1Q07617 926 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TRIM50Q86XT4 487 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CCDC50Q8IVM0 306 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 HS6ST3Q8IZP7 471 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 BEST2Q8NFU1 509 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SMARCAD1Q9H4L7 1026 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 GPRC5DQ9NZD1 345 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 AXIN2Q9Y2T1 843 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 ABCB11O95342 1321 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CEP152O94986 1710 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 MAGEB2O15479 319 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 GJB1P08034 283 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 STMN1P16949 149 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 DNA2P51530 1060 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 SPECC1LQ69YQ0 1117 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TRIML1Q8N9V2 468 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CCDC110Q8TBZ0 833 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 JAKMIP2Q96AA8 810 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 ZSCAN10Q96SZ4 725 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 DDX25Q9UHL0 483 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 PHLPP1O60346 1717 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 KDM6AO15550 1401 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 BCRP11274 1271 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 AKR1A1P14550 325 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CDK8P49336 464 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 EPHB1P54762 984 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 KIF5AQ12840 1032 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 TIGD1Q96MW7 591 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 CSRNP2Q9H175 543 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 MRPS17Q9Y2R5 130 aaKnown RBP5.51□□□□□ -1.53
SCN1A-218ENST00000640036 ADGRL2O95490 1459 aa5.51□□□□□ -1.53
SCN1A-218ENST00000640036 HUS1O60921 280 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 IGSF3O75054 1194 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ACADMP11310 421 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RXRAP19793 462 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 JAK3P52333 1124 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TTBK2Q6IQ55 1244 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PIK3AP1Q6ZUJ8 805 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 GSTA5Q7RTV2 222 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 DDX53Q86TM3 631 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PALM2Q8IXS6 379 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SCYL3Q8IZE3 742 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 STKLD1Q8NE28 680 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 IFT122Q9HBG6 1241 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 KMT5AQ9NQR1 393 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 DISC1Q9NRI5 854 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PREX1Q8TCU6 1659 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 UBE3CQ15386 1083 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SPDYE1Q8NFV5 336 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 AFG1LQ8WV93 481 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 FAM149B1Q96BN6 582 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 MMTAG2Q9BU76 263 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 CCDC68Q9H2F9 335 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 MTMR1Q13613 665 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 MAP7Q14244 749 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ACCSLQ4AC99 568 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 LMBRD2Q68DH5 695 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RNF214Q8ND24 703 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RABGGTAQ92696 567 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PLCD4Q9BRC7 762 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 POLE3Q9NRF9 147 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 FAN1Q9Y2M0 1017 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SH3BP1Q9Y3L3 701 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 AFG3L2Q9Y4W6 797 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ABCC4O15439 1325 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 UBN2Q6ZU65 1347 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 MYOM2P54296 1465 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SPDYE2BA6NHP3 402 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 GPR182O15218 404 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 AKR1B10O60218 316 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SPDYE6P0CI01 402 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TSTA3Q13630 321 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SEPT2Q15019 361 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 KIAA0753Q2KHM9 967 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF467Q7Z7K2 595 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 DDX42Q86XP3 938 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RGL4Q8IZJ4 473 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SLC44A5Q8NCS7 719 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TTLL11Q8NHH1 800 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 MTG1Q9BT17 334 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 VWA3AA6NCI4 1184 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 K7ENM7 598 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms