RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PIGSQ96S52 555 aa22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 LRRC27Q9C0I9 530 aa22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 BIN2Q9UBW5 565 aaPredicted RBP22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 GRIK5Q16478 980 aa22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 RC3H1Q5TC82 1133 aaKnown RBP22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 ZNF804AQ7Z570 1209 aa22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 RIN2Q8WYP3 895 aaPredicted RBP22.31■■□□□ 1.16
SYNGAP1-227ENST00000638142 LRRC53A6NM62 1247 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 ZPR1O75312 459 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 RPS6KA4O75676 772 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 PSMD2Q13200 908 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 RRAGAQ7L523 313 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 CCDC24Q8N4L8 307 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 CCDC155Q8N6L0 562 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 BAP1Q92560 729 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 KCNQ4P56696 695 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 PDIA5Q14554 519 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 LRRC55Q6ZSA7 311 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 SMIM5Q71RC9 77 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 FAM76AQ8TAV0 307 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 RIC8AQ9NPQ8 531 aa22.3■■□□□ 1.16
SYNGAP1-227ENST00000638142 SSU72P8A0A1W2PR75 194 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 SHOX2O60902 331 aaPredicted RBP22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 MAGEA1P43355 309 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 NOVP48745 357 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 RAD54LQ92698 747 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 TSG101Q99816 390 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 LRRC1Q9BTT6 524 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 RIOX1Q9H6W3 641 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 VAT1LQ9HCJ6 419 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 DDX60LQ5H9U9 1706 aaKnown RBP22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 BTDP43251 543 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 NOP2P46087 812 aaKnown RBP22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 MAPK8IP2Q13387 824 aaPredicted RBP22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 CCDC181Q5TID7 509 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 PDXDC1Q6P996 788 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 DYMQ7RTS9 669 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 PROM2Q8N271 834 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 IPO4Q8TEX9 1081 aaKnown RBP22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 DRC1Q96MC2 740 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 TMEM260Q9NX78 707 aa22.29■■□□□ 1.16
SYNGAP1-227ENST00000638142 GOLGA6CA6NDK9 693 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 GOLGA6DP0CG33 693 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 CORO7P57737 925 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 EHHADHQ08426 723 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 ASTE1Q2TB18 679 aaPredicted RBP22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 CEP95Q96GE4 821 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 GOLGA6AQ9NYA3 693 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 DMGDHQ9UI17 866 aaKnown RBP22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 PAFAH1B1P43034 410 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 NFRKBQ6P4R8 1299 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 C15orf52Q6ZUT6 534 aaKnown RBP22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 SND1Q7KZF4 910 aaKnown RBP eCLIP22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 RNF10Q8N5U6 811 aaKnown RBP22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 TSKSQ9UJT2 592 aa22.28■■□□□ 1.16
SYNGAP1-227ENST00000638142 CDK5RAP2Q96SN8 1893 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 GPR75-ASB3A0A0A6YYF3 556 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 PLCG2P16885 1265 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 TNFRSF8P28908 595 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 EPHB4P54760 987 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 GRAPQ13588 217 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 KRT79Q5XKE5 535 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 CACNA2D4Q7Z3S7 1137 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 TEX11Q8IYF3 940 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 GRAPLQ8TC17 118 aaPredicted RBP22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 HDAC7Q8WUI4 952 aa22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 NUCKS1Q9H1E3 243 aaKnown RBP22.27■■□□□ 1.16
SYNGAP1-227ENST00000638142 SLC37A4O43826 429 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 ADCY7P51828 1080 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 EZH2Q15910 746 aaKnown RBP22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 EMBQ6PCB8 327 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 ZFP91Q96JP5 570 aaPredicted RBP22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 NOX5Q96PH1 765 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 STIM2Q9P246 746 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 TMEM119Q4V9L6 283 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 SNX29Q8TEQ0 813 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 DDX12PQ92771 950 aa22.26■■□□□ 1.15
SYNGAP1-227ENST00000638142 RBAK-RBAKDNI3L0D1 243 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 SEPT2Q15019 361 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 GLE1Q53GS7 698 aaKnown RBP22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 SH3GL2Q99962 352 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 UBA5Q9GZZ9 404 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 RNF14Q9UBS8 474 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 TNRC6CQ9HCJ0 1690 aaKnown RBP22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 USP17L5A8MUK1 530 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 GOLGA8KD6RF30 607 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 TDP2O95551 362 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 HAUS3Q68CZ6 603 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 SYN2Q92777 582 aaPredicted RBP22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 TLR10Q9BXR5 811 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 MYH10P35580 1976 aa22.25■■□□□ 1.15
SYNGAP1-227ENST00000638142 POTEMA6NI47 508 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 HGSNATQ68CP4 663 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 GBP6Q6ZN66 633 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 MYOCDQ8IZQ8 938 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 CEP72Q9P209 647 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 OPA1O60313 960 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 PDHBP11177 359 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 FKBP3Q00688 224 aaKnown RBP22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 PPFIA1Q13136 1202 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms