RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ITGB8P26012 769 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 ALDH5A1P51649 535 aaPredicted RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 MRPL12P52815 198 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 PWP2Q15269 919 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 FAM109BQ6ICB4 259 aaPredicted RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 SLC30A10Q6XR72 485 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 RNPC3Q96LT9 517 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 PURBQ96QR8 312 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 PDGFCQ9NRA1 345 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 GNEQ9Y223 722 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 DDX49Q9Y6V7 483 aaKnown RBP20.87■□□□□ 0.93
CLN3-243ENST00000635973 ASTN1O14525 1302 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 TIMP1P01033 207 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 RPS6P62753 249 aaKnown RBP20.86■□□□□ 0.93
CLN3-243ENST00000635973 PDE4DQ08499 809 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 FUT2Q10981 343 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 CXCL17Q6UXB2 119 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 FAM161BQ96MY7 647 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 Q9Y3F1 56 aa20.86■□□□□ 0.93
CLN3-243ENST00000635973 V9GY48 417 aaPredicted RBP20.86■□□□□ 0.93
CLN3-243ENST00000635973 ST18O60284 1047 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 CFBP00751 764 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 CDK7P50613 346 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 NKX3-2P78367 333 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 TAPT1Q6NXT6 567 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 PHKBQ93100 1093 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 SLC26A6Q9BXS9 759 aa20.85■□□□□ 0.93
CLN3-243ENST00000635973 CTAGE5O15320 804 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 PFKFB2O60825 505 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 PPFIA3O75145 1194 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 SCRN1Q12765 414 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 TRIM22Q8IYM9 498 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 TMEM199Q8N511 208 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 RGS22Q8NE09 1264 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 MORC4Q8TE76 937 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 GPKOWQ92917 476 aaPredicted RBP eCLIP20.84■□□□□ 0.93
CLN3-243ENST00000635973 WDR11Q9BZH6 1224 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 MAF1Q9H063 256 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 TBX21Q9UL17 535 aa20.84■□□□□ 0.93
CLN3-243ENST00000635973 CDKL5O76039 1030 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 IFNAR1P17181 557 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 NAPAP54920 295 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 SMAD3P84022 425 aaKnown RBP20.83■□□□□ 0.93
CLN3-243ENST00000635973 PPIGQ13427 754 aaKnown RBP eCLIP20.83■□□□□ 0.936e-7■■□□□ 11.8
CLN3-243ENST00000635973 ITGA7Q13683 1181 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 DUSP28Q4G0W2 176 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 BRDTQ58F21 947 aaPredicted RBP20.83■□□□□ 0.93
CLN3-243ENST00000635973 MFSD5Q6N075 450 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 FAM126BQ8IXS8 530 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 CUL5Q93034 780 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 RNF26Q9BY78 433 aaPredicted RBP20.83■□□□□ 0.93
CLN3-243ENST00000635973 SEZ6LQ9BYH1 1024 aa20.83■□□□□ 0.93
CLN3-243ENST00000635973 GCOM1H8Y6P7 765 aaPredicted RBP20.82■□□□□ 0.92
CLN3-243ENST00000635973 POLR2MP0CAP2 368 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 EPHB4P54760 987 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 SSRP1Q08945 709 aaKnown RBP20.82■□□□□ 0.92
CLN3-243ENST00000635973 NTRK3Q16288 839 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 ME3Q16798 604 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 WWC2Q6AWC2 1192 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 DNERQ8NFT8 737 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 TBC1D5Q92609 795 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 PPP1R12CQ9BZL4 782 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 LIMCH1Q9UPQ0 1083 aa20.82■□□□□ 0.92
CLN3-243ENST00000635973 hCG_1984214I3L0E3 225 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 OPLAHO14841 1288 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 PRPF3O43395 683 aaKnown RBP20.81■□□□□ 0.92
CLN3-243ENST00000635973 LARGE1O95461 756 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 SCG2P13521 617 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 HOXA13P31271 388 aaPredicted RBP20.81■□□□□ 0.92
CLN3-243ENST00000635973 CPT1AP50416 773 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 PFKFB3Q16875 520 aaPredicted RBP20.81■□□□□ 0.92
CLN3-243ENST00000635973 SAMD3Q8N6K7 520 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 ZNF713Q8N859 430 aaPredicted RBP20.81■□□□□ 0.92
CLN3-243ENST00000635973 NECAB1Q8N987 351 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 OR6J1Q8NGC5 347 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 SYTL5Q8TDW5 730 aaPredicted RBP20.81■□□□□ 0.92
CLN3-243ENST00000635973 POLR3EQ9NVU0 708 aa20.81■□□□□ 0.92
CLN3-243ENST00000635973 PTGS1P23219 599 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 HSD17B4P51659 736 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 PPP1R18Q6NYC8 613 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 SMARCC2Q8TAQ2 1214 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 GTF3C6Q969F1 213 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 GUCD1Q96NT3 240 aa20.8■□□□□ 0.92
CLN3-243ENST00000635973 MAP3K20Q9NYL2 800 aaKnown RBP20.8■□□□□ 0.92
CLN3-243ENST00000635973 STXBP3O00186 592 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 NKRFO15226 690 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-243ENST00000635973 MYL3P08590 195 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 TMEM63BQ5T3F8 832 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 ARHGEF16Q5VV41 709 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 FCHSD1Q86WN1 690 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 IL27Q8NEV9 243 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 SCFD2Q8WU76 684 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 CCDC12Q8WUD4 166 aaPredicted RBP20.79■□□□□ 0.92
CLN3-243ENST00000635973 RMDN3Q96TC7 470 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 PSTPIP2Q9H939 334 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 BARHL2Q9NY43 387 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 COL20A1Q9P218 1284 aa20.79■□□□□ 0.92
CLN3-243ENST00000635973 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.78■□□□□ 0.92
CLN3-243ENST00000635973 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.78■□□□□ 0.92
CLN3-243ENST00000635973 RBM47A0AV96 593 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms