RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 EIF3JO75822 258 aaKnown RBP14.58□□□□□ -0.08
PNKP-217ENST00000625216 CALM1P0DP23 149 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 CALM2P0DP24 149 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 CALM3P0DP25 149 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 ITGB8P26012 769 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 HOMER1Q86YM7 354 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 FAM126BQ8IXS8 530 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 ZNF654Q8IZM8 581 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 OR6J1Q8NGC5 347 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 ZSCAN31Q96LW9 406 aaPredicted RBP14.58□□□□□ -0.08
PNKP-217ENST00000625216 PIGSQ96S52 555 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 SLKQ9H2G2 1235 aaPredicted RBP14.58□□□□□ -0.08
PNKP-217ENST00000625216 COL20A1Q9P218 1284 aa14.58□□□□□ -0.08
PNKP-217ENST00000625216 MCM3APO60318 1980 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 CCDC69A6NI79 296 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 GCOM1H8Y6P7 765 aaPredicted RBP14.57□□□□□ -0.08
PNKP-217ENST00000625216 OPLAHO14841 1288 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 CYTH3O43739 400 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 CD4P01730 458 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 NR3C2P08235 984 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 POLR2MP0CAP2 368 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 FGD1P98174 961 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 FPGSQ05932 587 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 SHHQ15465 462 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 SLC35G1Q2M3R5 365 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 MFSD5Q6N075 450 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 CCDC62Q6P9F0 684 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 NFXL1Q6ZNB6 911 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 CCDC83Q8IWF9 413 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 MTG1Q9BT17 334 aaPredicted RBP14.57□□□□□ -0.08
PNKP-217ENST00000625216 SPZ1Q9BXG8 430 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 PXMP2Q9NR77 195 aa14.57□□□□□ -0.08
PNKP-217ENST00000625216 SH2B1Q9NRF2 756 aaPredicted RBP14.57□□□□□ -0.08
PNKP-217ENST00000625216 PTGS1P23219 599 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 DDIT3P35638 169 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 EVCP57679 992 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 PURAQ00577 322 aaKnown RBP14.56□□□□□ -0.08
PNKP-217ENST00000625216 KCNV1Q6PIU1 500 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 NECAB1Q8N987 351 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 RRP36Q96EU6 259 aaKnown RBP14.56□□□□□ -0.08
PNKP-217ENST00000625216 BRPF3Q9ULD4 1205 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 GRIN2DO15399 1336 aa14.56□□□□□ -0.08
PNKP-217ENST00000625216 MYH6P13533 1939 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 KLF18A0A0U1RQI7 1052 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 GH1P01241 217 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 HSP90AA1P07900 732 aaKnown RBP14.55□□□□□ -0.08
PNKP-217ENST00000625216 MYL3P08590 195 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 SUPT20HL2P0C7V6 817 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 EIF2AK2P19525 551 aaKnown RBP14.55□□□□□ -0.08
PNKP-217ENST00000625216 STK3Q13188 491 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 PPIGQ13427 754 aaKnown RBP eCLIP14.55□□□□□ -0.088e-7■■■■□ 21.6
PNKP-217ENST00000625216 C9orf50Q5SZB4 431 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 FAM109BQ6ICB4 259 aaPredicted RBP14.55□□□□□ -0.08
PNKP-217ENST00000625216 SYNE3Q6ZMZ3 975 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 SEPT14Q6ZU15 432 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 VSIG10LQ86VR7 867 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 SGMS1Q86VZ5 419 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 TMEM199Q8N511 208 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 PDCD2LQ9BRP1 358 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 SLC12A7Q9Y666 1083 aa14.55□□□□□ -0.08
PNKP-217ENST00000625216 ARIH2O95376 493 aa14.54□□□□□ -0.08
PNKP-217ENST00000625216 PDIA3P30101 505 aaKnown RBP14.54□□□□□ -0.08
PNKP-217ENST00000625216 PTPN11Q06124 597 aaPredicted RBP14.54□□□□□ -0.08
PNKP-217ENST00000625216 DEFB123Q8N688 67 aa14.54□□□□□ -0.08
PNKP-217ENST00000625216 COPS5Q92905 334 aa14.54□□□□□ -0.08
PNKP-217ENST00000625216 GTF3C6Q969F1 213 aa14.54□□□□□ -0.08
PNKP-217ENST00000625216 INTS4Q96HW7 963 aaKnown RBP14.54□□□□□ -0.08
PNKP-217ENST00000625216 SEC63Q9UGP8 760 aaKnown RBP14.54□□□□□ -0.08
PNKP-217ENST00000625216 DDX41Q9UJV9 622 aaKnown RBP14.54□□□□□ -0.08
PNKP-217ENST00000625216 NID2Q14112 1375 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 GOLGA8BA8MQT2 603 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 PFKFB2O60825 505 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 DTNBO60941 627 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 TGFB3P10600 412 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 HOXA13P31271 388 aaPredicted RBP14.53□□□□□ -0.08
PNKP-217ENST00000625216 EPHB4P54760 987 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 PSMC6P62333 389 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 SMAD3P84022 425 aaKnown RBP14.53□□□□□ -0.08
PNKP-217ENST00000625216 SCRN1Q12765 414 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 LAMC2Q13753 1193 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 LY6KQ17RY6 165 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 NFRKBQ6P4R8 1299 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 APOA5Q6Q788 366 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 RAB11FIP4Q86YS3 637 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 FANCBQ8NB91 859 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 EMID1Q96A84 441 aaPredicted RBP14.53□□□□□ -0.08
PNKP-217ENST00000625216 ZNF274Q96GC6 653 aaPredicted RBP14.53□□□□□ -0.08
PNKP-217ENST00000625216 MYL10Q9BUA6 226 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 HIPK3Q9H422 1215 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 MRVI1Q9Y6F6 885 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 LCTP09848 1927 aa14.53□□□□□ -0.08
PNKP-217ENST00000625216 LRRC37A2A6NM11 1700 aa14.52□□□□□ -0.08
PNKP-217ENST00000625216 B4GALT4O60513 344 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 STAM2O75886 525 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 MYCLP12524 364 aaPredicted RBP14.52□□□□□ -0.09
PNKP-217ENST00000625216 CCND2P30279 289 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 ARHGAP1Q07960 439 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 PGM5Q15124 567 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 NBPF20Q3BBV1 942 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 FCHSD1Q86WN1 690 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms