RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MRVI1Q9Y6F6 885 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 TANC1Q9C0D5 1861 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 CDH23Q9H251 3354 aa13.83□□□□□ -0.19
UPF3B-204ENST00000619445 BAIAP3O94812 1187 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 GSPT1P15170 499 aaKnown RBP13.83□□□□□ -0.2
UPF3B-204ENST00000619445 EIF2AK2P19525 551 aaKnown RBP13.83□□□□□ -0.2
UPF3B-204ENST00000619445 CHMLP26374 656 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 PBX2P40425 430 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 ARHGAP1Q07960 439 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 GRM4Q14833 912 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 WTAPQ15007 396 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 STOX1Q6ZVD7 989 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 CATIPQ7Z7H3 387 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 PPTC7Q8NI37 304 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 COPS5Q92905 334 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 SCLYQ96I15 445 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 MAP3K14Q99558 947 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 COL20A1Q9P218 1284 aa13.83□□□□□ -0.2
UPF3B-204ENST00000619445 DDX41Q9UJV9 622 aaKnown RBP13.83□□□□□ -0.2
UPF3B-204ENST00000619445 GBF1Q92538 1859 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 MYH7BA7E2Y1 1941 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 BAZ2BQ9UIF8 2168 aaKnown RBP13.82□□□□□ -0.2
UPF3B-204ENST00000619445 CHD9Q3L8U1 2897 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 GRXCR1A8MXD5 290 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 KIF28PB7ZC32 967 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 GCOM1H8Y6P7 765 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-204ENST00000619445 PPFIA4O75335 1185 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 STAM2O75886 525 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 ARIH2O95376 493 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 CYP21A2P08686 494 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 IQCF3P0C7M6 154 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 POLR2MP0CAP2 368 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 PDE4AP27815 886 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 PTGISQ16647 500 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 LY6KQ17RY6 165 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 DHX37Q8IY37 1157 aaKnown RBP13.82□□□□□ -0.2
UPF3B-204ENST00000619445 STAG2Q8N3U4 1231 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 TBC1D5Q92609 795 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 PDCD2LQ9BRP1 358 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 TSPYL2Q9H2G4 693 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-204ENST00000619445 RIOX1Q9H6W3 641 aa13.82□□□□□ -0.2
UPF3B-204ENST00000619445 TRIP12Q14669 1992 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-204ENST00000619445 PNMA6FA0A0J9YX94 578 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 SGSM2O43147 1006 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 EFCAB14O75071 495 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 CCND2P30279 289 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 KIF5BP33176 963 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 RBL2Q08999 1139 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 GNPTABQ3T906 1256 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 TMEM67Q5HYA8 995 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 PPP2R2DQ66LE6 453 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 CYB5R4Q7L1T6 521 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 DEFB128Q7Z7B8 93 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 VSIG10LQ86VR7 867 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 TMTC2Q8N394 836 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 C7orf31Q8N865 590 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 LZTS2Q9BRK4 669 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 FTOQ9C0B1 505 aaKnown RBP eCLIP13.81□□□□□ -0.2
UPF3B-204ENST00000619445 PRDM12Q9H4Q4 367 aa13.81□□□□□ -0.2
UPF3B-204ENST00000619445 PRUNE2Q8WUY3 3088 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 SCN5AQ14524 2016 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 E7EWF7 191 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 F2P00734 622 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 HOXD8P13378 290 aaPredicted RBP13.8□□□□□ -0.2
UPF3B-204ENST00000619445 SMARCA1P28370 1054 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 GNAQP50148 359 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 TROAPQ12815 778 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 TJAP1Q5JTD0 557 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 CHST3Q7LGC8 479 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 HOMER1Q86YM7 354 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 CTCFLQ8NI51 663 aaPredicted RBP13.8□□□□□ -0.2
UPF3B-204ENST00000619445 ATXN2LQ8WWM7 1075 aaKnown RBP13.8□□□□□ -0.2
UPF3B-204ENST00000619445 MAP4K1Q92918 833 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 IL25Q9H293 177 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 NKX2-4Q9H2Z4 354 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 GTF2IRD1Q9UHL9 959 aa13.8□□□□□ -0.2
UPF3B-204ENST00000619445 OPLAHO14841 1288 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 DDAH1O94760 285 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 MYCLP12524 364 aaPredicted RBP13.79□□□□□ -0.2
UPF3B-204ENST00000619445 SELPP16109 830 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 KCNJ6P48051 423 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 PSEN2P49810 448 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 CHMP4BP1P59074 171 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 PTH1RQ03431 593 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 PGM5Q15124 567 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 XRRA1Q6P2D8 792 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 CASC1Q6TDU7 716 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 KAT2BQ92831 832 aa13.79□□□□□ -0.2
UPF3B-204ENST00000619445 PPP1R11O60927 126 aaPredicted RBP13.78□□□□□ -0.2
UPF3B-204ENST00000619445 PTK7Q13308 1070 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 MFSD10Q14728 455 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 CELF3Q5SZQ8 465 aaKnown RBP13.78□□□□□ -0.2
UPF3B-204ENST00000619445 MYSM1Q5VVJ2 828 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 LRRC8DQ7L1W4 858 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 CUL5Q93034 780 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 VWCEQ96DN2 955 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 SPATA33Q96N06 139 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 PIGSQ96S52 555 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 SPZ1Q9BXG8 430 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 THEGQ9P2T0 379 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms