RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ONECUT3O60422 494 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC175P0C221 793 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 IBSPP21815 317 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 TRAPPC10P48553 1259 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 JAG1P78504 1218 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 SLC15A2Q16348 729 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 CYP2W1Q8TAV3 490 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 DDX25Q9UHL0 483 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 FZD1Q9UP38 647 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 SFI1A8K8P3 1242 aa16.08■□□□□ 0.17
SHROOM1-208ENST00000617339 TBC1D5Q92609 795 aa16.08■□□□□ 0.17
SHROOM1-208ENST00000617339 DNAJC18Q9H819 358 aa16.08■□□□□ 0.17
SHROOM1-208ENST00000617339 MMRN2Q9H8L6 949 aa16.08■□□□□ 0.17
SHROOM1-208ENST00000617339 DDX39AO00148 427 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ZMYND10O75800 440 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 GUCY2CP25092 1073 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ERCC5P28715 1186 aaPredicted RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 TSR1Q2NL82 804 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 PRAMEF18Q5VWM3 479 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 KRT79Q5XKE5 535 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 SH2D3AQ9BRG2 576 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 PCDHA12Q9UN75 941 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 KIAA1024Q9UPX6 916 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 TNRC6CQ9HCJ0 1690 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 GOLGA6L9A6NEM1 432 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 F5H6K3 240 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ENC1O14682 589 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 KLRC3Q07444 240 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ZNF543Q08ER8 600 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 TBC1D8BQ0IIM8 1120 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 DGKZQ13574 1117 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 PLS1Q14651 629 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 TMEM266Q2M3C6 531 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ZNF658Q5TYW1 1059 aaPredicted RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 TRIML1Q8N9V2 468 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 PPM1EQ8WY54 764 aa16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ADD3Q9UEY8 706 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-208ENST00000617339 ABCB5Q2M3G0 1257 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 NCAPH2Q6IBW4 605 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SV2BQ7L1I2 683 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SLC35F6Q8N357 371 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 LRP5O75197 1615 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 COL22A1Q8NFW1 1626 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 CYP27A1Q02318 531 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SP4Q02446 784 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 ANKRD40Q6AI12 368 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SH3RF1Q7Z6J0 888 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 ACER1Q8TDN7 264 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 MYCBPQ99417 103 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 PSMB7Q99436 277 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SHTN1A0MZ66 631 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 LRRIQ3A6PVS8 624 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 STX10O60499 249 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 CDC37Q16543 378 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 KCTD19Q17RG1 926 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 TCP11X2Q5H9J9 407 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 BCAS3Q9H6U6 928 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 FAM198AQ9UFP1 575 aa16.07■□□□□ 0.16
SHROOM1-208ENST00000617339 SH3BP5LQ7L8J4 393 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 SPZ1Q9BXG8 430 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.06■□□□□ 0.161e-16■■■■■ 250
SHROOM1-208ENST00000617339 CDC23Q9UJX2 597 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 ZBTB21Q9ULJ3 1066 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 CHD4Q14839 1912 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 SORBS3O60504 671 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 GYPCP04921 128 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 MRPL12P52815 198 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 NT5DC1Q5TFE4 455 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 TTC19Q6DKK2 380 aaPredicted RBP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 ARHGAP27Q6ZUM4 889 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 ANKRD13CQ8N6S4 541 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 NOA1Q8NC60 698 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 CUL5Q93034 780 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 AGPAT5Q9NUQ2 364 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 RMND1Q9NWS8 449 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 L1RE1Q9UN81 338 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEB3A0JP26 581 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 MYMKA6NI61 221 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 POTECB2RU33 542 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 RNF40O75150 1001 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 PTPROQ16827 1216 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEBQ6S5H4 581 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 NOC4LQ9BVI4 516 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 PDS5AQ29RF7 1337 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 MYH6P13533 1939 aa16.06■□□□□ 0.16
SHROOM1-208ENST00000617339 GAKO14976 1311 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 MNAT1P51948 309 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 APBA1Q02410 837 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 PABPC4Q13310 644 aaKnown RBP eCLIP16.05■□□□□ 0.164e-10■■■□□ 17.1
SHROOM1-208ENST00000617339 ECM1Q16610 540 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 ARL6IP4Q66PJ3 421 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 EP400NLQ6ZTU2 488 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 PODNQ7Z5L7 613 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 GSPT2Q8IYD1 628 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CEP112Q8N8E3 955 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 LZTS2Q9BRK4 669 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 TRIM9Q9C026 710 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 TMEM39BQ9GZU3 492 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 PI4KBQ9UBF8 816 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms