RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 TOB1P50616 345 aaPredicted RBP16.71■□□□□ 0.27
CD48-203ENST00000613788 ORC2Q13416 577 aaPredicted RBP16.71■□□□□ 0.27
CD48-203ENST00000613788 CEP55Q53EZ4 464 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 TTC38Q5R3I4 469 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 FAM173BQ6P4H8 233 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 TRIM17Q9Y577 477 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 ZNFX1Q9P2E3 1918 aaKnown RBP16.71■□□□□ 0.27
CD48-203ENST00000613788 SYNGAP1Q96PV0 1343 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 MGAMO43451 1857 aa16.71■□□□□ 0.27
CD48-203ENST00000613788 MRPS9P82933 396 aaKnown RBP16.7■□□□□ 0.26
CD48-203ENST00000613788 GNPTABQ3T906 1256 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 ARMCX2Q7L311 632 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 OTOP1Q7RTM1 612 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 NLRX1Q86UT6 975 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 IL31RAQ8NI17 732 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 RAET1EQ8TD07 263 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 MXRA8Q9BRK3 442 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 RTEL1Q9NZ71 1219 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 MAFGO15525 162 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 EDIL3O43854 480 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 FOXD4L6Q3SYB3 417 aaPredicted RBP16.7■□□□□ 0.26
CD48-203ENST00000613788 FOXD4L3Q6VB84 417 aaPredicted RBP16.7■□□□□ 0.26
CD48-203ENST00000613788 NIPA1Q7RTP0 329 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 CFAP45Q9UL16 551 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 CEP131Q9UPN4 1083 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 UBIAD1Q9Y5Z9 338 aa16.7■□□□□ 0.26
CD48-203ENST00000613788 MEIS1O00470 390 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 TDP2O95551 362 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 MCM7P33993 719 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 LBX1P52954 281 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 ZNF174Q15697 407 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 CCL14Q16627 93 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 Q4G0T1 1027 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 PRR16Q569H4 304 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 MFSD14CQ5VZR4 134 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 CDHR1Q96JP9 859 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 MBOAT7Q96N66 472 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 JADE2Q9NQC1 790 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.69■□□□□ 0.26
CD48-203ENST00000613788 DDX25Q9UHL0 483 aaKnown RBP16.69■□□□□ 0.26
CD48-203ENST00000613788 CNPY2Q9Y2B0 182 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 PCDHB6Q9Y5E3 794 aa16.69■□□□□ 0.26
CD48-203ENST00000613788 FAM86B1E9PN63 330 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 ADCY3O60266 1144 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 SNAI1O95863 264 aaPredicted RBP16.68■□□□□ 0.26
CD48-203ENST00000613788 BMP15O95972 392 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 FAM86B2P0C5J1 330 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 ITGB5P18084 799 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 SETQ01105 290 aaPredicted RBP16.68■□□□□ 0.26
CD48-203ENST00000613788 PLA2G4DQ86XP0 818 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 PXYLP1Q8TE99 480 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 GPRASP2Q96D09 838 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 ZFP91Q96JP5 570 aaPredicted RBP16.68■□□□□ 0.26
CD48-203ENST00000613788 INPP4AQ96PE3 977 aaPredicted RBP16.68■□□□□ 0.26
CD48-203ENST00000613788 ABHD16BQ9H3Z7 469 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 VTA1Q9NP79 307 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.68■□□□□ 0.26
CD48-203ENST00000613788 FLRT1Q9NZU1 646 aa16.68■□□□□ 0.26
CD48-203ENST00000613788 DOCK3Q8IZD9 2030 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 IGLV3-22A0A075B6J6 115 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 NEMFO60524 1076 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 KRT85P78386 507 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 DNM1Q05193 864 aaKnown RBP16.67■□□□□ 0.26
CD48-203ENST00000613788 MTMR1Q13613 665 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 NBR1Q14596 966 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 SF3A1Q15459 793 aaKnown RBP16.67■□□□□ 0.26
CD48-203ENST00000613788 ANO1Q5XXA6 986 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 KCNV1Q6PIU1 500 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 EEPD1Q7L9B9 569 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 CYP2W1Q8TAV3 490 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 USP28Q96RU2 1077 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 WDR11Q9BZH6 1224 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 POLR3EQ9NVU0 708 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 TFIP11Q9UBB9 837 aaKnown RBP16.67■□□□□ 0.26
CD48-203ENST00000613788 DDX49Q9Y6V7 483 aaKnown RBP16.67■□□□□ 0.26
CD48-203ENST00000613788 LCTP09848 1927 aa16.67■□□□□ 0.26
CD48-203ENST00000613788 ZSWIM8A7E2V4 1837 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 LAD1O00515 517 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 WNT7AO00755 349 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 FIBPO43427 364 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 MARCH6O60337 910 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 BAG4O95429 457 aaKnown RBP16.66■□□□□ 0.26
CD48-203ENST00000613788 IGHA2P01877 340 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 TGFB3P10600 412 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 ICAM3P32942 547 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 CYP2C19P33261 490 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 CEBPZQ03701 1054 aaKnown RBP16.66■□□□□ 0.26
CD48-203ENST00000613788 ACVR2BQ13705 512 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 SEPT14Q6ZU15 432 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 SLAIN1Q8ND83 568 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 TRIB2Q92519 343 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 TNPO1Q92973 898 aaKnown RBP16.66■□□□□ 0.26
CD48-203ENST00000613788 KCNH7Q9NS40 1196 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 NRBP1Q9UHY1 535 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 PTPN22Q9Y2R2 807 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 CLIC4Q9Y696 253 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 PLXNA1Q9UIW2 1896 aa16.66■□□□□ 0.26
CD48-203ENST00000613788 SPATA31C2B4DYI2 1134 aa16.65■□□□□ 0.26
CD48-203ENST00000613788 TBX3O15119 743 aa16.65■□□□□ 0.26
CD48-203ENST00000613788 SLC37A4O43826 429 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms