RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRPF3O43395 683 aaKnown RBP22.22■■□□□ 1.15
UPF1-212ENST00000601689 KPNA6O60684 536 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 FOSP01100 380 aaPredicted RBP22.22■■□□□ 1.15
UPF1-212ENST00000601689 TGFB3P10600 412 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 SCG2P13521 617 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 ADCY7P51828 1080 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 SSRP1Q08945 709 aaKnown RBP22.22■■□□□ 1.15
UPF1-212ENST00000601689 PFKFB3Q16875 520 aaPredicted RBP22.22■■□□□ 1.15
UPF1-212ENST00000601689 C1orf53Q5VUE5 145 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 WWC2Q6AWC2 1192 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 MCTP2Q6DN12 878 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 USP17L6PQ6QN14 398 aa22.22■■□□□ 1.15
UPF1-212ENST00000601689 ALDH8A1Q9H2A2 487 aaPredicted RBP22.22■■□□□ 1.15
UPF1-212ENST00000601689 SMCO2A6NFE2 343 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 H0YGN5 161 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 MEIS2O14770 477 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 GH1P01241 217 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 IFNAR1P17181 557 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 GNA11P29992 359 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 RTP1P59025 263 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 FUT2Q10981 343 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 CCDC148Q8NFR7 591 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 SLC26A6Q9BXS9 759 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 C6orf50Q9HD87 102 aa22.21■■□□□ 1.15
UPF1-212ENST00000601689 ALPK3Q96L96 1907 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 A0A0U1RQG5 324 aaPredicted RBP22.2■■□□□ 1.14
UPF1-212ENST00000601689 NEK4P51957 841 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 BEX3Q00994 111 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 STK3Q13188 491 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 NLRX1Q86UT6 975 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 BICD2Q8TD16 824 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 RIC8AQ9NPQ8 531 aa22.2■■□□□ 1.14
UPF1-212ENST00000601689 MYADML2A6NDP7 307 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 DCDC2CA8MYV0 355 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 TLR3O15455 904 aaKnown RBP22.19■■□□□ 1.14
UPF1-212ENST00000601689 LAMC2Q13753 1193 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 C8orf34Q49A92 452 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 PCNX4Q63HM2 1172 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 CCSAPQ6IQ19 270 aaPredicted RBP22.19■■□□□ 1.14
UPF1-212ENST00000601689 DHX37Q8IY37 1157 aaKnown RBP22.19■■□□□ 1.14
UPF1-212ENST00000601689 CDHR1Q96JP9 859 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 LBHD1Q9BQE6 289 aaPredicted RBP22.19■■□□□ 1.14
UPF1-212ENST00000601689 MYH7BA7E2Y1 1941 aa22.19■■□□□ 1.14
UPF1-212ENST00000601689 STXBP3O00186 592 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 SEC24BO95487 1268 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 AP3B2Q13367 1082 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 SNX17Q15036 470 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 LY6KQ17RY6 165 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 PHKBQ93100 1093 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 IL17RAQ96F46 866 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 DDX41Q9UJV9 622 aaKnown RBP22.18■■□□□ 1.14
UPF1-212ENST00000601689 PCDHA6Q9UN73 950 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 PCDHA8Q9Y5H6 950 aa22.18■■□□□ 1.14
UPF1-212ENST00000601689 FRMPD4Q14CM0 1322 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 DEXIO95424 95 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 MYL3P08590 195 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 XBP1P17861 261 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 AK2P54819 239 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 UBE2SQ16763 222 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 TRIM60Q495X7 471 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 CCDC62Q6P9F0 684 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 CXCL17Q6UXB2 119 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 LARP6Q9BRS8 491 aaKnown RBP22.17■■□□□ 1.14
UPF1-212ENST00000601689 MLXIPQ9HAP2 919 aa22.17■■□□□ 1.14
UPF1-212ENST00000601689 NCOA5Q9HCD5 579 aaKnown RBP22.17■■□□□ 1.14
UPF1-212ENST00000601689 ZMYND8Q9ULU4 1186 aaPredicted RBP22.17■■□□□ 1.14
UPF1-212ENST00000601689 ARVCFO00192 962 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 FIBPO43427 364 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 PQBP1O60828 265 aaKnown RBP22.16■■□□□ 1.14
UPF1-212ENST00000601689 NEDD9Q14511 834 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 NTRK3Q16288 839 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 GIMAP8Q8ND71 665 aaPredicted RBP22.16■■□□□ 1.14
UPF1-212ENST00000601689 TOX2Q96NM4 488 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 MTG1Q9BT17 334 aaPredicted RBP22.16■■□□□ 1.14
UPF1-212ENST00000601689 C22orf23Q9BZE7 217 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 PRDM5Q9NQX1 630 aaPredicted RBP22.16■■□□□ 1.14
UPF1-212ENST00000601689 SH3GLB2Q9NR46 395 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 RTEL1Q9NZ71 1219 aa22.16■■□□□ 1.14
UPF1-212ENST00000601689 ESYT2A0FGR8 921 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 A6NJR5 290 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 CTAGE5O15320 804 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 MAFGO15525 162 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 ARIH2O95376 493 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 ITGA7Q13683 1181 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 DGKDQ16760 1214 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 FAM177A1Q8N128 213 aaPredicted RBP22.15■■□□□ 1.14
UPF1-212ENST00000601689 IL27Q8NEV9 243 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 COPS5Q92905 334 aa22.15■■□□□ 1.14
UPF1-212ENST00000601689 EMID1Q96A84 441 aaPredicted RBP22.15■■□□□ 1.14
UPF1-212ENST00000601689 CLTBP09497 229 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 SYN1P17600 705 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 ICAM3P32942 547 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 ZNF76P36508 570 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 NLRP5P59047 1200 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 IRX5P78411 483 aaPredicted RBP22.14■■□□□ 1.13
UPF1-212ENST00000601689 TLE2Q04725 743 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 ANKRD33Q7Z3H0 272 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 IL31RAQ8NI17 732 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 WASF1Q92558 559 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 INPP4AQ96PE3 977 aaPredicted RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms