RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ERICH2A1L162 156 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 ACTN1P12814 892 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 RALYLQ86SE5 291 aaKnown RBP20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 VWCEQ96DN2 955 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 CERS4Q9HA82 394 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 SENP2Q9HC62 589 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 MAD2L2Q9UI95 211 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 U3KPZ7 1027 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 MYH7BA7E2Y1 1941 aa20.44■□□□□ 0.86
SHKBP1-223ENST00000600552 KIAA1217Q5T5P2 1943 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 EYSQ5T1H1 3165 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 PPP1R11O60927 126 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 EIF3JO75822 258 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 IQCF3P0C7M6 154 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 CASTP20810 708 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 CHMLP26374 656 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 BFSP2Q13515 415 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 ADGRE1Q14246 886 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 GDF6Q6KF10 455 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 FCHSD1Q86WN1 690 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 DHX37Q8IY37 1157 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 PIGSQ96S52 555 aa20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 DDX41Q9UJV9 622 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-223ENST00000600552 PRUNE2Q8WUY3 3088 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 RBAK-RBAKDNI3L0D1 243 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 ZBTB5O15062 677 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 CYP21A2P08686 494 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 ZNF286BP0CG31 522 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 PTPN11Q06124 597 aaPredicted RBP20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 DGKDQ16760 1214 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 PCDHA11Q9Y5I1 949 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 TAF6LQ9Y6J9 622 aa20.42■□□□□ 0.86
SHKBP1-223ENST00000600552 PALM3A6NDB9 673 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 OPLAHO14841 1288 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 PFKMP08237 780 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 PSEN2P49810 448 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 GRM4Q14833 912 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 WTAPQ15007 396 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 TMEM67Q5HYA8 995 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 CCDC155Q8N6L0 562 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 C7orf31Q8N865 590 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 KAT2BQ92831 832 aa20.41■□□□□ 0.86
SHKBP1-223ENST00000600552 E7EWF7 191 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 RFC2P35250 354 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 HSD17B4P51659 736 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 LAMC2Q13753 1193 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 NCOA7Q8NI08 942 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 MAF1Q9H063 256 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 HDAC6Q9UBN7 1215 aa20.4■□□□□ 0.86
SHKBP1-223ENST00000600552 CDH23Q9H251 3354 aa20.39■□□□□ 0.86
SHKBP1-223ENST00000600552 GCOM1H8Y6P7 765 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 RFXAPO00287 272 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 PITPNM1O00562 1244 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 CA3P07451 260 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 POLR2MP0CAP2 368 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 MFSD10Q14728 455 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 SART3Q15020 963 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 SLC35G1Q2M3R5 365 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 CATIPQ7Z7H3 387 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 IL31RAQ8NI17 732 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 SYMPKQ92797 1274 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 PDCD2LQ9BRP1 358 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 TET1Q8NFU7 2136 aa20.39■□□□□ 0.85
SHKBP1-223ENST00000600552 GGPS1O95749 300 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 PGM5Q15124 567 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 KIAA0753Q2KHM9 967 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 STOX1Q6ZVD7 989 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 MTMR8Q96EF0 704 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 SPATA33Q96N06 139 aa20.38■□□□□ 0.85
SHKBP1-223ENST00000600552 CCND2P30279 289 aa20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 KCNJ6P48051 423 aa20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 ZNF200P98182 395 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 SKIV2LQ15477 1246 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 TJAP1Q5JTD0 557 aa20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 TMCO2Q7Z6W1 182 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 GPKOWQ92917 476 aaPredicted RBP eCLIP20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 MLXIPQ9HAP2 919 aa20.37■□□□□ 0.85
SHKBP1-223ENST00000600552 PNMA6FA0A0J9YX94 578 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 KIF28PB7ZC32 967 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 SGSM2O43147 1006 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 RGS20O76081 388 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 SELPP16109 830 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 LRRC8DQ7L1W4 858 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 VSIG10LQ86VR7 867 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 HERC6Q8IVU3 1022 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 PPTC7Q8NI37 304 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 CAGE1Q8TC20 777 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 AFAP1L1Q8TED9 768 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 ARNTL2Q8WYA1 636 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 DHX38Q92620 1227 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 SLC9A7Q96T83 725 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 ZBED2Q9BTP6 218 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 MYL10Q9BUA6 226 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 KATNAL1Q9BW62 490 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 RIOX1Q9H6W3 641 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 THEGQ9P2T0 379 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 GTF2IRD1Q9UHL9 959 aa20.36■□□□□ 0.85
SHKBP1-223ENST00000600552 CHD9Q3L8U1 2897 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 CYTH3O43739 400 aa20.35■□□□□ 0.85
SHKBP1-223ENST00000600552 SP2Q02086 613 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms