RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PGBD1Q96JS3 809 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 C8orf76Q96K31 380 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 PDGFCQ9NRA1 345 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 SMC3Q9UQE7 1217 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 KIF3AQ9Y496 699 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 ADCYAP1R1P41586 468 aa22.11■■□□□ 1.13
UPF1-209ENST00000600310 MRPS9P82933 396 aaKnown RBP22.11■■□□□ 1.13
UPF1-209ENST00000600310 KRT40Q6A162 431 aa22.11■■□□□ 1.13
UPF1-209ENST00000600310 TNRC18O15417 2968 aaPredicted RBP22.11■■□□□ 1.13
UPF1-209ENST00000600310 HTTP42858 3142 aa22.11■■□□□ 1.13
UPF1-209ENST00000600310 MCM3APO60318 1980 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 SGPL1O95470 568 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 MMP1P03956 469 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 GJB2P29033 226 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 GJA8P48165 433 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 FOSBP53539 338 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 U2AF1L4Q8WU68 220 aaKnown RBP22.1■■□□□ 1.13
UPF1-209ENST00000600310 SCFD2Q8WU76 684 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 INTS4Q96HW7 963 aaKnown RBP22.1■■□□□ 1.13
UPF1-209ENST00000600310 CRISPLD2Q9H0B8 497 aa22.1■■□□□ 1.13
UPF1-209ENST00000600310 RGS20O76081 388 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 RARBP10826 455 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 CAPN2P17655 700 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 KRT2P35908 639 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 ARHGAP4P98171 946 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 TNFAIP2Q03169 654 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 ANO1Q5XXA6 986 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 SEPT14Q6ZU15 432 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 FBXO18Q8NFZ0 1043 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 CRYGNQ8WXF5 182 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 ZFP91Q96JP5 570 aaPredicted RBP22.09■■□□□ 1.13
UPF1-209ENST00000600310 INPP4AQ96PE3 977 aaPredicted RBP22.09■■□□□ 1.13
UPF1-209ENST00000600310 WDR11Q9BZH6 1224 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 BRMS1Q9HCU9 246 aa22.09■■□□□ 1.13
UPF1-209ENST00000600310 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.08■■□□□ 1.13
UPF1-209ENST00000600310 POTEFA5A3E0 1075 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 ADCY6O43306 1168 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 DUSP11O75319 330 aaKnown RBP22.08■■□□□ 1.13
UPF1-209ENST00000600310 SMPD1P17405 629 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 SOX10P56693 466 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 TTLL4Q14679 1199 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 CCDC62Q6P9F0 684 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 OXER1Q8TDS5 423 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 RTEL1Q9NZ71 1219 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 OGDHLQ9ULD0 1010 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 GNEQ9Y223 722 aaKnown RBP22.08■■□□□ 1.13
UPF1-209ENST00000600310 UBIAD1Q9Y5Z9 338 aa22.08■■□□□ 1.13
UPF1-209ENST00000600310 LRRC37A2A6NM11 1700 aa22.08■■□□□ 1.12
UPF1-209ENST00000600310 CYP3A4P08684 503 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 ICAM3P32942 547 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 GUCY1B3Q02153 619 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 GNPTABQ3T906 1256 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 DUSP28Q4G0W2 176 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 KRT25Q7Z3Z0 450 aa22.07■■□□□ 1.12
UPF1-209ENST00000600310 DIS3L2Q8IYB7 885 aaKnown RBP22.07■■□□□ 1.12
UPF1-209ENST00000600310 NKRFO15226 690 aaKnown RBP eCLIP22.06■■□□□ 1.12
UPF1-209ENST00000600310 TGFB3P10600 412 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 ITGB5P18084 799 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 SAFBQ15424 915 aaKnown RBP eCLIP22.06■■□□□ 1.12
UPF1-209ENST00000600310 TMEM63BQ5T3F8 832 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 KCNV1Q6PIU1 500 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 NLRX1Q86UT6 975 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 TNFRSF25Q93038 417 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 LENG1Q96BZ8 264 aaPredicted RBP22.06■■□□□ 1.12
UPF1-209ENST00000600310 JADE2Q9NQC1 790 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 Q9Y3F1 56 aa22.06■■□□□ 1.12
UPF1-209ENST00000600310 CCDC194A0A1B0GVG4 234 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 BTBD18B2RXH4 712 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 FIBPO43427 364 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 ARIH2O95376 493 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 TFRCP02786 760 aaKnown RBP22.05■■□□□ 1.12
UPF1-209ENST00000600310 TXNP10599 105 aaKnown RBP22.05■■□□□ 1.12
UPF1-209ENST00000600310 USP11P51784 963 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 NR5A1Q13285 461 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 NONOQ15233 471 aaKnown RBP eCLIP22.05■■□□□ 1.12
UPF1-209ENST00000600310 TBCKQ8TEA7 893 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 GPRASP2Q96D09 838 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 MXRA8Q9BRK3 442 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 XPNPEP3Q9NQH7 507 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 DDX41Q9UJV9 622 aaKnown RBP22.05■■□□□ 1.12
UPF1-209ENST00000600310 MRVI1Q9Y6F6 885 aa22.05■■□□□ 1.12
UPF1-209ENST00000600310 SPATA31C2B4DYI2 1134 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 EDIL3O43854 480 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 SLC34A2O95436 690 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 EN2P19622 333 aaPredicted RBP22.04■■□□□ 1.12
UPF1-209ENST00000600310 CIITAP33076 1130 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 NKX3-2P78367 333 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 SEMA3FQ13275 785 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 CEP55Q53EZ4 464 aa22.04■■□□□ 1.12
UPF1-209ENST00000600310 UPF3AQ9H1J1 476 aaKnown RBP22.04■■□□□ 1.12
UPF1-209ENST00000600310 MAFGO15525 162 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 ADAMTS4O75173 837 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 PGK1P00558 417 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 ZNF76P36508 570 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 GJA9P57773 515 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 LY6KQ17RY6 165 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 GJC2Q5T442 439 aaPredicted RBP22.03■■□□□ 1.12
UPF1-209ENST00000600310 PIK3AP1Q6ZUJ8 805 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 NIPA1Q7RTP0 329 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 TLK2Q86UE8 772 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms