RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 DUSP28Q4G0W2 176 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 JAKMIP3Q5VZ66 844 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 CPLX2Q6PUV4 134 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 TRIM22Q8IYM9 498 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 ANKLE1Q8NAG6 615 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 UPF3AQ9H1J1 476 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 ORC3Q9UBD5 711 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 KCNJ14Q9UNX9 436 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 RBBP6Q7Z6E9 1792 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 LRRC37A2A6NM11 1700 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 STK36Q9NRP7 1315 aa16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 MYCNP04198 464 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 GJA9P57773 515 aa16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 NKX3-2P78367 333 aa16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 BEX3Q00994 111 aa16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 SEMA3FQ13275 785 aa16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 ZSCAN31Q96LW9 406 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 DDX41Q9UJV9 622 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-217ENST00000598558 MCM3APO60318 1980 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 B4DLN1 442 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 CDKL5O76039 1030 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 TXNP10599 105 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 CCND2P30279 289 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 PCNX4Q63HM2 1172 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 ARRDC4Q8NCT1 418 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 SCFD2Q8WU76 684 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 INPP4AQ96PE3 977 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 ANO3Q9BYT9 981 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 C6orf50Q9HD87 102 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 SH3GLB2Q9NR46 395 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 MYH6P13533 1939 aa16.29■□□□□ 0.2
SHKBP1-217ENST00000598558 M0R2N6 131 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 DNM1LO00429 736 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 C6orf222P0C671 652 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 CAPN2P17655 700 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 ITGB5P18084 799 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 NLRP5P59047 1200 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 KCNA10Q16322 511 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 TLK2Q86UE8 772 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 CYP2W1Q8TAV3 490 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 CRYGNQ8WXF5 182 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 FERMT2Q96AC1 680 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 TMX3Q96JJ7 454 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 MPHOSPH6Q99547 160 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 ALG1Q9BT22 464 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 C11orf49Q9H6J7 331 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 TELO2Q9Y4R8 837 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 UBIAD1Q9Y5Z9 338 aa16.28■□□□□ 0.2
SHKBP1-217ENST00000598558 SPDYE3A6NKU9 549 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 ST18O60284 1047 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 SORBS3O60504 671 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 FOSBP53539 338 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 ARHGAP1Q07960 439 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 TTLL4Q14679 1199 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 NECAB2Q7Z6G3 386 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 OXER1Q8TDS5 423 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 PHF20Q9BVI0 1012 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 SENP6Q9GZR1 1112 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 PHF24Q9UPV7 400 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 Q9Y3F1 56 aa16.27■□□□□ 0.2
SHKBP1-217ENST00000598558 SPATA31C2B4DYI2 1134 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 ATP9AO75110 1047 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 FOSP01100 380 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 CST5P28325 142 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 GNA11P29992 359 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 ICAM3P32942 547 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 SREBF1P36956 1147 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 MLLT1Q03111 559 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 GNASQ5JWF2 1037 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 RNF180Q86T96 592 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 BLIDQ8IZY5 108 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 CCDC148Q8NFR7 591 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 CCDC12Q8WUD4 166 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 GLT8D2Q9H1C3 349 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 SH2B1Q9NRF2 756 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 PCDH10Q9P2E7 1040 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 PCDHA4Q9UN74 947 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 MRVI1Q9Y6F6 885 aa16.26■□□□□ 0.19
SHKBP1-217ENST00000598558 MKI67P46013 3256 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 ASGR1P07306 291 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 ACLYP53396 1101 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 ATN1P54259 1190 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 ARHGAP4P98171 946 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 AP3B2Q13367 1082 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 FSCN1Q16658 493 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 LRRC26Q2I0M4 334 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 EARS2Q5JPH6 523 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 XRRA1Q6P2D8 792 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 TEX2Q8IWB9 1127 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 REXO1Q8N1G1 1221 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 DAGLBQ8NCG7 672 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 OR6J1Q8NGC5 347 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 LLPHQ9BRT6 129 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 AP5M1Q9H0R1 490 aa16.25■□□□□ 0.19
SHKBP1-217ENST00000598558 A0A1W2PQ45 241 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 A0A1W2PQY0 241 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 KBTBD13C9JR72 458 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 FAM86B1E9PN63 330 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 NKRFO15226 690 aaKnown RBP eCLIP16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 FAM86B2P0C5J1 330 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms