RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 RTP1P59025 263 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 SP2Q02086 613 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 SCRN1Q12765 414 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 SNX17Q15036 470 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 FSCN1Q16658 493 aaKnown RBP12.83□□□□□ -0.36
VRK3-210ENST00000596121 SMARCC2Q8TAQ2 1214 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 SLC26A6Q9BXS9 759 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 AP5M1Q9H0R1 490 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 RIC8AQ9NPQ8 531 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 DDX41Q9UJV9 622 aaKnown RBP12.83□□□□□ -0.36
VRK3-210ENST00000596121 GRIN2DO15399 1336 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 SMCO2A6NFE2 343 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 MOXD2PA6NHM9 499 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 B4DLN1 442 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 PFKFB2O60825 505 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 CTDNEP1O95476 244 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 MRPL12P52815 198 aaKnown RBP12.82□□□□□ -0.36
VRK3-210ENST00000596121 ARHGAP1Q07960 439 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 ST3GAL1Q11201 340 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 SEMA3FQ13275 785 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 TTLL4Q14679 1199 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 ME3Q16798 604 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 TRIM60Q495X7 471 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 PRPF38BQ5VTL8 546 aaKnown RBP12.82□□□□□ -0.36
VRK3-210ENST00000596121 CXCL17Q6UXB2 119 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 NECAB1Q8N987 351 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 CUL5Q93034 780 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 PGBD1Q96JS3 809 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 AIFM3Q96NN9 605 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 MPHOSPH6Q99547 160 aaKnown RBP12.82□□□□□ -0.36
VRK3-210ENST00000596121 RNF26Q9BY78 433 aaPredicted RBP12.82□□□□□ -0.36
VRK3-210ENST00000596121 RTEL1Q9NZ71 1219 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 ZMYND8Q9ULU4 1186 aaPredicted RBP12.82□□□□□ -0.36
VRK3-210ENST00000596121 PCDHA6Q9UN73 950 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 TELO2Q9Y4R8 837 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 PCDHA8Q9Y5H6 950 aa12.82□□□□□ -0.36
VRK3-210ENST00000596121 A6NJR5 290 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 SORBS3O60504 671 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 SYN1P17600 705 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 CCND2P30279 289 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 CLK2P49760 499 aaKnown RBP12.81□□□□□ -0.36
VRK3-210ENST00000596121 PSMC6P62333 389 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 TLE2Q04725 743 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 PCNX4Q63HM2 1172 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 PPP1R18Q6NYC8 613 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 PCSK9Q8NBP7 692 aaKnown RBP12.81□□□□□ -0.36
VRK3-210ENST00000596121 OR6J1Q8NGC5 347 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 PPP1R13LQ8WUF5 828 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 C22orf23Q9BZE7 217 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 SPC25Q9HBM1 224 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 ATP11BQ9Y2G3 1177 aa12.81□□□□□ -0.36
VRK3-210ENST00000596121 RANBP2P49792 3224 aaKnown RBP12.81□□□□□ -0.36
VRK3-210ENST00000596121 KIAA1217Q5T5P2 1943 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 hCG_1984214I3L0E3 225 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 NKRFO15226 690 aaKnown RBP eCLIP12.8□□□□□ -0.36
VRK3-210ENST00000596121 EIF5BO60841 1220 aaKnown RBP12.8□□□□□ -0.36
VRK3-210ENST00000596121 ITGB5P18084 799 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 RBM25P49756 843 aaKnown RBP12.8□□□□□ -0.36
VRK3-210ENST00000596121 CDK7P50613 346 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 ADCY7P51828 1080 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 C1orf53Q5VUE5 145 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 SH3RF1Q7Z6J0 888 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 ZNF713Q8N859 430 aaPredicted RBP12.8□□□□□ -0.36
VRK3-210ENST00000596121 AFG1LQ8WV93 481 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 INPP4AQ96PE3 977 aaPredicted RBP12.8□□□□□ -0.36
VRK3-210ENST00000596121 ZMYND12Q9H0C1 365 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 SLKQ9H2G2 1235 aaPredicted RBP12.8□□□□□ -0.36
VRK3-210ENST00000596121 STARD7Q9NQZ5 370 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 VPS54Q9P1Q0 977 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 NR2E3Q9Y5X4 410 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 MRVI1Q9Y6F6 885 aa12.8□□□□□ -0.36
VRK3-210ENST00000596121 ESYT2A0FGR8 921 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 SPATA31C2B4DYI2 1134 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 EDIL3O43854 480 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 GH1P01241 217 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 FDPSP14324 419 aaKnown RBP12.79□□□□□ -0.36
VRK3-210ENST00000596121 UBA1P22314 1058 aaKnown RBP12.79□□□□□ -0.36
VRK3-210ENST00000596121 ICAM3P32942 547 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 PURAQ00577 322 aaKnown RBP12.79□□□□□ -0.36
VRK3-210ENST00000596121 SSRP1Q08945 709 aaKnown RBP12.79□□□□□ -0.36
VRK3-210ENST00000596121 MYSM1Q5VVJ2 828 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 JAKMIP3Q5VZ66 844 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 SLC43A3Q8NBI5 491 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 CYP2W1Q8TAV3 490 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 RASGRP4Q8TDF6 673 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 PRO3102Q9H379 93 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 GJB4Q9NTQ9 266 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 ELP1O95163 1332 aa12.79□□□□□ -0.36
VRK3-210ENST00000596121 TRIM43BA6NCK2 446 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 SPDYE3A6NKU9 549 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 ARVCFO00192 962 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 CPLX1O14810 134 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 ATP9AO75110 1047 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 MMP3P08254 477 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 MYL3P08590 195 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 ITGB8P26012 769 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 AKAP17AQ02040 695 aaKnown RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 FAAP100Q0VG06 881 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 ANKRD1Q15327 319 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 NPY5RQ15761 445 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms