RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 RABGAP1Q9Y3P9 1069 aa17.14■□□□□ 0.34
VRK3-207ENST00000594092 TBX3O15119 743 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 MARCH6O60337 910 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 TXLNAP40222 546 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 TYRO3Q06418 890 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 IL31RAQ8NI17 732 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 DHX58Q96C10 678 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 PURBQ96QR8 312 aaKnown RBP17.14■□□□□ 0.33
VRK3-207ENST00000594092 CCSER1Q9C0I3 900 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 CYP39A1Q9NYL5 469 aa17.14■□□□□ 0.33
VRK3-207ENST00000594092 PDHXO00330 501 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 CYP2C8P10632 490 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 UBA7P41226 1012 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 PDIA5Q14554 519 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 CEP55Q53EZ4 464 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 ANKRD23Q86SG2 305 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 SAPCD2Q86UD0 394 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 RASAL3Q86YV0 1011 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 SLFN12Q8IYM2 578 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 UIMC1Q96RL1 719 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 RMDN3Q96TC7 470 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 MOV10L1Q9BXT6 1211 aaKnown RBP17.13■□□□□ 0.33
VRK3-207ENST00000594092 PXMP2Q9NR77 195 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 LRWD1Q9UFC0 647 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 FBXO40Q9UH90 709 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 PCDHA12Q9UN75 941 aa17.13■□□□□ 0.33
VRK3-207ENST00000594092 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 MSH4O15457 936 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 EIF2AK2P19525 551 aaKnown RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 ZNF157P51786 506 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 KARSQ15046 597 aaKnown RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 E2F4Q16254 413 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 ELOA2Q8IYF1 753 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 RNF214Q8ND24 703 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 ANP32BQ92688 251 aaKnown RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 ERCC4Q92889 916 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 FAM20AQ96MK3 541 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 RAB34Q9BZG1 259 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 POTEMA6NI47 508 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 MEIS1O00470 390 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 SLFN14P0C7P3 912 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 PGM5Q15124 567 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 Q3C1V9 767 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 PCNX4Q63HM2 1172 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 CABP7Q86V35 215 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 NCAPG2Q86XI2 1143 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 PLA2G4DQ86XP0 818 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 FAM43AQ8N2R8 423 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 IQUBQ8NA54 791 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 SMC1BQ8NDV3 1235 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 GTF3C2Q8WUA4 911 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 ZFP91Q96JP5 570 aaPredicted RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 PTPN18Q99952 460 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 MXRA8Q9BRK3 442 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 PDCD2LQ9BRP1 358 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 PYM1Q9BRP8 204 aaKnown RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 MMTAG2Q9BU76 263 aaKnown RBP17.12■□□□□ 0.33
VRK3-207ENST00000594092 DISC1Q9NRI5 854 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 KIAA1468Q9P260 1216 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 USP25Q9UHP3 1055 aa17.12■□□□□ 0.33
VRK3-207ENST00000594092 FOXN1O15353 648 aa17.11■□□□□ 0.33
VRK3-207ENST00000594092 SLC25A27O95847 323 aa17.11■□□□□ 0.33
VRK3-207ENST00000594092 MRPS9P82933 396 aaKnown RBP17.11■□□□□ 0.33
VRK3-207ENST00000594092 MDM2Q00987 491 aaPredicted RBP17.11■□□□□ 0.33
VRK3-207ENST00000594092 ARHGEF16Q5VV41 709 aa17.11■□□□□ 0.33
VRK3-207ENST00000594092 ITGB5P18084 799 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 ERCC3P19447 782 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 PNOCQ13519 176 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 RGMBQ6NW40 437 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 KANK3Q6NY19 840 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 CEP57L1Q8IYX8 460 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 ANKRD35Q8N283 1001 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 R3HDMLQ9H3Y0 253 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 UBIAD1Q9Y5Z9 338 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 PFASO15067 1338 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 TESPA1A2RU30 521 aaPredicted RBP17.1■□□□□ 0.33
VRK3-207ENST00000594092 COPB2P35606 906 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 ERVK-9P63128 1117 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 ERVK-24P63145 666 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 SETQ01105 290 aaPredicted RBP17.1■□□□□ 0.33
VRK3-207ENST00000594092 SPIRE1Q08AE8 756 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 RRAGBQ5VZM2 374 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 PDXDC2PQ6P474 469 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 NIPA1Q7RTP0 329 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 GRAMD1CQ8IYS0 662 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 RASSF8Q8NHQ8 419 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 NSUN6Q8TEA1 469 aaKnown RBP17.1■□□□□ 0.33
VRK3-207ENST00000594092 SMCR8Q8TEV9 937 aaPredicted RBP17.1■□□□□ 0.33
VRK3-207ENST00000594092 CCDC39Q9UFE4 941 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 HOOK1Q9UJC3 728 aaKnown RBP17.1■□□□□ 0.33
VRK3-207ENST00000594092 TLL2Q9Y6L7 1015 aa17.1■□□□□ 0.33
VRK3-207ENST00000594092 LCTP09848 1927 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 ARP10275 920 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 BCRP11274 1271 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 POSTNQ15063 836 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 ZRSR1Q15695 479 aaKnown RBP17.09■□□□□ 0.33
VRK3-207ENST00000594092 STX1AQ16623 288 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 NAALADL2Q58DX5 795 aa17.09■□□□□ 0.33
VRK3-207ENST00000594092 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.09■□□□□ 0.33
VRK3-207ENST00000594092 SH3RF1Q7Z6J0 888 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms