RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NUDT12Q9BQG2 462 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 TMEM106CQ9BVX2 250 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 INO80BQ9C086 356 aaPredicted RBP10.89□□□□□ -0.67
LIG3-216ENST00000593099 CYLC1P35663 651 aaPredicted RBP10.89□□□□□ -0.67
LIG3-216ENST00000593099 NOP2P46087 812 aaKnown RBP10.89□□□□□ -0.67
LIG3-216ENST00000593099 TMX2Q9Y320 296 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 SYNRGQ9UMZ2 1314 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 TCRBV5S4A2TA0A5A2 114 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 KIF5CO60282 957 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 STX10O60499 249 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 GADD45BO75293 160 aaPredicted RBP10.88□□□□□ -0.67
LIG3-216ENST00000593099 GAP43P17677 238 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 SMARCA1P28370 1054 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 FCGRTP55899 365 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 SLC8A3P57103 927 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 NLRP12P59046 1061 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 ORC2Q13416 577 aaPredicted RBP10.88□□□□□ -0.67
LIG3-216ENST00000593099 KRBA2Q6ZNG9 492 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 PCDHB6Q9Y5E3 794 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIG3-216ENST00000593099 TNNI1P19237 187 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 MARK3P27448 753 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 USP11P51784 963 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 LINC00301Q8NCQ3 95 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 FAM193BQ96PV7 902 aaPredicted RBP10.88□□□□□ -0.67
LIG3-216ENST00000593099 TMEM260Q9NX78 707 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 PFASO15067 1338 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 PHRF1Q9P1Y6 1649 aaKnown RBP10.88□□□□□ -0.67
LIG3-216ENST00000593099 ANTXR2P58335 489 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 ARID5AQ03989 594 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 PKP1Q13835 747 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 GJB4Q9NTQ9 266 aa10.88□□□□□ -0.67
LIG3-216ENST00000593099 KRT19P08727 400 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 SETSIPP0DME0 302 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 SFNP31947 248 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 RESTQ13127 1097 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 ABI1Q8IZP0 508 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 NELFBQ8WX92 580 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 DDX4Q9NQI0 724 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 RCOR1Q9UKL0 485 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 RIC1Q4ADV7 1423 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 MEIS1O00470 390 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 ABCD1P33897 745 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 PNOCQ13519 176 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 RAPGEF1Q13905 1077 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 BMS1Q14692 1282 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 IQCEQ6IPM2 695 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 FBXO28Q9NVF7 368 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 ARGLU1Q9NWB6 273 aaPredicted RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 SRPRBQ9Y5M8 271 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 CYP2J2P51589 502 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 PRELPP51888 382 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 GTF2A1P52655 376 aaPredicted RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 IFI16Q16666 785 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 ANKRD13CQ8N6S4 541 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 RUFY1Q96T51 708 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 SALL3Q9BXA9 1300 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 GNA14O95837 355 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 TXNP10599 105 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 ZSCAN20P17040 1043 aaPredicted RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 CEP55Q53EZ4 464 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 RDH13Q8NBN7 331 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 NEK9Q8TD19 979 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 TRPM4Q8TD43 1214 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 FAM49AQ9H0Q0 323 aaPredicted RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 KMT5AQ9NQR1 393 aa10.87□□□□□ -0.67
LIG3-216ENST00000593099 LUC7L2Q9Y383 392 aaKnown RBP10.87□□□□□ -0.67
LIG3-216ENST00000593099 KIF2AO00139 706 aaPredicted RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 IPO5O00410 1097 aaKnown RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 HNRNPDLO14979 420 aaKnown RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 KRT5P13647 590 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 PPATQ06203 517 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 ARMCX5Q6P1M9 558 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 SPATA33Q96N06 139 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 ALS2CR12Q96Q35 445 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 RPS6KC1Q96S38 1066 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 KIAA1683Q9H0B3 1180 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 JMJD4Q9H9V9 463 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 KIAA1468Q9P260 1216 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 COL16A1Q07092 1604 aaPredicted RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 PRPF6O94906 941 aaKnown RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 NR3C2P08235 984 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 P4HA1P13674 534 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 SHMT1P34896 483 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 TRIML1Q8N9V2 468 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 DISC1Q9NRI5 854 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 LMBRD1Q9NUN5 540 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 IFNKQ9P0W0 207 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 NFE2L3Q9Y4A8 694 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 STRCQ7RTU9 1775 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 RPN1P04843 607 aaKnown RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 CTTNQ14247 550 aaKnown RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 GRIK5Q16478 980 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 KIFAP3Q92845 792 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 VPS16Q9H269 839 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 LRFN2Q9ULH4 789 aa10.86□□□□□ -0.67
LIG3-216ENST00000593099 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.86□□□□□ -0.67
LIG3-216ENST00000593099 MACROD2A1Z1Q3 448 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms