RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 CD4P01730 458 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 RCAN1P53805 252 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 PGM5Q15124 567 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 SHHQ15465 462 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 LY6KQ17RY6 165 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 PSRC1Q6PGN9 363 aaPredicted RBP12.66□□□□□ -0.38
LIG3-214ENST00000592244 SKAP1Q86WV1 359 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 EMID1Q96A84 441 aaPredicted RBP12.66□□□□□ -0.38
LIG3-214ENST00000592244 LRCH3Q96II8 777 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 LRRC2Q9BYS8 371 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 ALDH8A1Q9H2A2 487 aaPredicted RBP12.66□□□□□ -0.38
LIG3-214ENST00000592244 PSTPIP2Q9H939 334 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 MCM3APO60318 1980 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 PIK3CDO00329 1044 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 SOX1O00570 391 aaPredicted RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 EIF5BO60841 1220 aaKnown RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 PSMC6P62333 389 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 RTN1Q16799 776 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 TMEM63BQ5T3F8 832 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 APOA5Q6Q788 366 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 BLOC1S2Q6QNY1 142 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 TMTC3Q6ZXV5 915 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 RPUSD2Q8IZ73 545 aaKnown RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 SRBD1Q8N5C6 995 aaKnown RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 DEFB123Q8N688 67 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 CCDC155Q8N6L0 562 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 PPTC7Q8NI37 304 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 AFG1LQ8WV93 481 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 COPS5Q92905 334 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 PPP1R12CQ9BZL4 782 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 GLT8D2Q9H1C3 349 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 PPP4R2Q9NY27 417 aa12.65□□□□□ -0.38
LIG3-214ENST00000592244 DDX41Q9UJV9 622 aaKnown RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
LIG3-214ENST00000592244 SPDYE3A6NKU9 549 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 hCG_1984214I3L0E3 225 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 B4GALT4O60513 344 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 ARIH2O95376 493 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 PLEKHA8P1O95397 391 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 MMP3P08254 477 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 RXRAP19793 462 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 ITGB8P26012 769 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 HSPA4P34932 840 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 CHMP4BP1P59074 171 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 SMAD3P84022 425 aaKnown RBP12.64□□□□□ -0.39
LIG3-214ENST00000592244 EXOSC10Q01780 885 aaKnown RBP12.64□□□□□ -0.39
LIG3-214ENST00000592244 ARHGAP1Q07960 439 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 NEDD9Q14511 834 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 SLC35G1Q2M3R5 365 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 NBPF20Q3BBV1 942 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 FAM109BQ6ICB4 259 aaPredicted RBP12.64□□□□□ -0.39
LIG3-214ENST00000592244 HEATR3Q7Z4Q2 680 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 NLRX1Q86UT6 975 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 CCDC82Q8N4S0 544 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 ZNF713Q8N859 430 aaPredicted RBP12.64□□□□□ -0.39
LIG3-214ENST00000592244 RETREG2Q8NC44 543 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 CDHR1Q96JP9 859 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 TRPV6Q9H1D0 765 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 MLXIPQ9HAP2 919 aa12.64□□□□□ -0.39
LIG3-214ENST00000592244 GRIN2DO15399 1336 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 KLF18A0A0U1RQI7 1052 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 GOLGA8AA7E2F4 631 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 GOLGA8BA8MQT2 603 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 NOP56O00567 594 aaKnown RBP12.63□□□□□ -0.39
LIG3-214ENST00000592244 FIBPO43427 364 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 PPFIA4O75335 1185 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 PFKMP08237 780 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 PTGS1P23219 599 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 BFSP2Q13515 415 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 C9orf50Q5SZB4 431 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 CELF3Q5SZQ8 465 aaKnown RBP12.63□□□□□ -0.39
LIG3-214ENST00000592244 ZNF697Q5TEC3 545 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 C7orf31Q8N865 590 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 GIMAP8Q8ND71 665 aaPredicted RBP12.63□□□□□ -0.39
LIG3-214ENST00000592244 SPATA33Q96N06 139 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 JAKMIP1Q96N16 626 aaKnown RBP12.63□□□□□ -0.39
LIG3-214ENST00000592244 NOC4LQ9BVI4 516 aaKnown RBP12.63□□□□□ -0.39
LIG3-214ENST00000592244 IL23AQ9NPF7 189 aa12.63□□□□□ -0.39
LIG3-214ENST00000592244 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.62□□□□□ -0.39
LIG3-214ENST00000592244 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.62□□□□□ -0.39
LIG3-214ENST00000592244 GGPS1O95749 300 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 CSF2RAP15509 400 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 CYP2C18P33260 490 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 RFC2P35250 354 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 METAP2P50579 478 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG3-214ENST00000592244 AKAP17AQ02040 695 aaKnown RBP12.62□□□□□ -0.39
LIG3-214ENST00000592244 ADCK5Q3MIX3 580 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 PCNX4Q63HM2 1172 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 PPP1R18Q6NYC8 613 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 SESTD1Q86VW0 696 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 RAB11FIP4Q86YS3 637 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 CMTR1Q8N1G2 835 aaKnown RBP12.62□□□□□ -0.39
LIG3-214ENST00000592244 KCNB2Q92953 911 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 INPP4AQ96PE3 977 aaPredicted RBP12.62□□□□□ -0.39
LIG3-214ENST00000592244 LRRC37A2A6NM11 1700 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 FRMPD4Q14CM0 1322 aa12.62□□□□□ -0.39
LIG3-214ENST00000592244 TMEM265A0A087WTH1 108 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 PITPNM1O00562 1244 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 MEIS2O14770 477 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms