RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SCRN1Q12765 414 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 FSCN1Q16658 493 aaKnown RBP13.66□□□□□ -0.22
LIG3-213ENST00000590630 GNASQ5JWF2 1037 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 CCSAPQ6IQ19 270 aaPredicted RBP13.66□□□□□ -0.22
LIG3-213ENST00000590630 XRRA1Q6P2D8 792 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 KCNV1Q6PIU1 500 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 SEPT14Q6ZU15 432 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 IL31RAQ8NI17 732 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 DPF3Q92784 378 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 KIF2CQ99661 725 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 MYADML2A6NDP7 307 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 SMCO2A6NFE2 343 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 CTAGE5O15320 804 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 DYNC1LI2O43237 492 aaPredicted RBP13.65□□□□□ -0.22
LIG3-213ENST00000590630 EVI5O60447 810 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 FOSP01100 380 aaPredicted RBP13.65□□□□□ -0.22
LIG3-213ENST00000590630 ACLYP53396 1101 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 KCNA10Q16322 511 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 UBE2SQ16763 222 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 PCNX4Q63HM2 1172 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 CCDC62Q6P9F0 684 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 FAM177A1Q8N128 213 aaPredicted RBP13.65□□□□□ -0.22
LIG3-213ENST00000590630 IL27Q8NEV9 243 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 CCDC148Q8NFR7 591 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 ZMYND12Q9H0C1 365 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 EHMT1Q9H9B1 1298 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 SH3GLB2Q9NR46 395 aa13.65□□□□□ -0.22
LIG3-213ENST00000590630 RANBP2P49792 3224 aaKnown RBP13.65□□□□□ -0.22
LIG3-213ENST00000590630 A0A1W2PQ45 241 aaPredicted RBP13.64□□□□□ -0.23
LIG3-213ENST00000590630 A0A1W2PQY0 241 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 ZEB2O60315 1214 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 PPFIA3O75145 1194 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 RGS20O76081 388 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 ARIH2O95376 493 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 DEXIO95424 95 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 TGFB3P10600 412 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 GNA11P29992 359 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 CPT1AP50416 773 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 AP3B2Q13367 1082 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 GNPTABQ3T906 1256 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 BRDTQ58F21 947 aaPredicted RBP13.64□□□□□ -0.23
LIG3-213ENST00000590630 TMEM63BQ5T3F8 832 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 C1orf53Q5VUE5 145 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 MCTP2Q6DN12 878 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 OR6J1Q8NGC5 347 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 FERMT2Q96AC1 680 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 GLT1D1Q96MS3 346 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 INPP4AQ96PE3 977 aaPredicted RBP13.64□□□□□ -0.23
LIG3-213ENST00000590630 C6orf50Q9HD87 102 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 NR2E3Q9Y5X4 410 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 MRVI1Q9Y6F6 885 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 STK36Q9NRP7 1315 aa13.64□□□□□ -0.23
LIG3-213ENST00000590630 CABYRO75952 493 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 GH1P01241 217 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 ASGR1P07306 291 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 CLK2P49760 499 aaKnown RBP13.63□□□□□ -0.23
LIG3-213ENST00000590630 IRX5P78411 483 aaPredicted RBP13.63□□□□□ -0.23
LIG3-213ENST00000590630 MRPS9P82933 396 aaKnown RBP13.63□□□□□ -0.23
LIG3-213ENST00000590630 BEX3Q00994 111 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 SNX17Q15036 470 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 RABEP1Q15276 862 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 ME3Q16798 604 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 LY6KQ17RY6 165 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 LRRC26Q2I0M4 334 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 SLC39A5Q6ZMH5 540 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 BICD2Q8TD16 824 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 GTF3C6Q969F1 213 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 EMID1Q96A84 441 aaPredicted RBP13.63□□□□□ -0.23
LIG3-213ENST00000590630 DDX41Q9UJV9 622 aaKnown RBP13.63□□□□□ -0.23
LIG3-213ENST00000590630 PCDHA6Q9UN73 950 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 LIMCH1Q9UPQ0 1083 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 PCDHA8Q9Y5H6 950 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 DOCK5Q9H7D0 1870 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 ELP1O95163 1332 aa13.63□□□□□ -0.23
LIG3-213ENST00000590630 SCN10AQ9Y5Y9 1956 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 A6NJR5 290 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 LARGE1O95461 756 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 PTGS1P23219 599 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 ATN1P54259 1190 aaPredicted RBP13.62□□□□□ -0.23
LIG3-213ENST00000590630 PRPF38BQ5VTL8 546 aaKnown RBP13.62□□□□□ -0.23
LIG3-213ENST00000590630 REXO1Q8N1G1 1221 aaKnown RBP13.62□□□□□ -0.23
LIG3-213ENST00000590630 COPS5Q92905 334 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 STARD7Q9NQZ5 370 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 VPS54Q9P1Q0 977 aa13.62□□□□□ -0.23
LIG3-213ENST00000590630 FIBPO43427 364 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 KPNA6O60684 536 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 ICAM3P32942 547 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 SREBF1P36956 1147 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 RTP1P59025 263 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 ARHGAP1Q07960 439 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 LAMC2Q13753 1193 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 NLRX1Q86UT6 975 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 C7orf61Q8IZ16 206 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 NECAB1Q8N987 351 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 WASF1Q92558 559 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 CDHR1Q96JP9 859 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 ANO3Q9BYT9 981 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 BACH2Q9BYV9 841 aa13.61□□□□□ -0.23
LIG3-213ENST00000590630 POLR3EQ9NVU0 708 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms