RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 FOXD4L3Q6VB84 417 aaPredicted RBP9.91□□□□□ -0.82
SMAD4-209ENST00000589941 GREM2Q9H772 168 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 ABCB6Q9NP58 842 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 KCNK4Q9NYG8 393 aa9.91□□□□□ -0.82
SMAD4-209ENST00000589941 DDX3YO15523 660 aaKnown RBP9.9□□□□□ -0.82
SMAD4-209ENST00000589941 PDE8AO60658 829 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 COL6A1P12109 1028 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 MAP4K3Q8IVH8 894 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 SLC7A3Q8WY07 619 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 LENG1Q96BZ8 264 aaPredicted RBP9.9□□□□□ -0.82
SMAD4-209ENST00000589941 KLHDC7BQ96G42 594 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 SRA1Q9HD15 236 aaKnown RBP9.9□□□□□ -0.82
SMAD4-209ENST00000589941 CD209Q9NNX6 404 aa9.9□□□□□ -0.82
SMAD4-209ENST00000589941 TNPO2O14787 897 aaKnown RBP9.89□□□□□ -0.83
SMAD4-209ENST00000589941 CTSWP56202 376 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 SHHQ15465 462 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 NFE2L2Q16236 605 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 FAM117BQ6P1L5 589 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 NACC1Q96RE7 527 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 UHRF1Q96T88 793 aaPredicted RBP9.89□□□□□ -0.83
SMAD4-209ENST00000589941 PARK7Q99497 189 aaKnown RBP9.89□□□□□ -0.83
SMAD4-209ENST00000589941 BCO2Q9BYV7 579 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 RNF19AQ9NV58 838 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 BSDC1Q9NW68 430 aaPredicted RBP9.89□□□□□ -0.83
SMAD4-209ENST00000589941 OGDHLQ9ULD0 1010 aa9.89□□□□□ -0.83
SMAD4-209ENST00000589941 TMEM238LA0A1B0GVL6 79 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 C9orf172C9J069 976 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 ADAM11O75078 769 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 WISP1O95388 367 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 PROCP04070 461 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 PCCAP05165 728 aaPredicted RBP9.88□□□□□ -0.83
SMAD4-209ENST00000589941 LDHBP07195 334 aaKnown RBP9.88□□□□□ -0.83
SMAD4-209ENST00000589941 ESRRAP11474 423 aaPredicted RBP9.88□□□□□ -0.83
SMAD4-209ENST00000589941 DDX10Q13206 875 aaKnown RBP9.88□□□□□ -0.83
SMAD4-209ENST00000589941 TNFAIP1Q13829 316 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 IKBKEQ14164 716 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 IGF2-ASQ6U949 168 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 NXPE4Q6UWF7 544 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 CFAP53Q96M91 514 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 PLEKHF1Q96S99 279 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 MYD88Q99836 296 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 TRANK1O15050 2925 aa9.88□□□□□ -0.83
SMAD4-209ENST00000589941 HMGCRP04035 888 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 ITPKAP23677 461 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 CD68P34810 354 aaPredicted RBP9.87□□□□□ -0.83
SMAD4-209ENST00000589941 ADGRE1Q14246 886 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 MBTPS1Q14703 1052 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 ZNF423Q2M1K9 1284 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 ALG1LQ6GMV1 187 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 TTLL11Q8NHH1 800 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 FBF1Q8TES7 1133 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 FOXD4L4Q8WXT5 416 aaPredicted RBP9.87□□□□□ -0.83
SMAD4-209ENST00000589941 CDC5LQ99459 802 aaKnown RBP9.87□□□□□ -0.83
SMAD4-209ENST00000589941 SPOCK3Q9BQ16 436 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 LRFN3Q9BTN0 628 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 ZNF576Q9H609 170 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 NUDCQ9Y266 331 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 LEMD3Q9Y2U8 911 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 MYO9BQ13459 2157 aa9.87□□□□□ -0.83
SMAD4-209ENST00000589941 PPATQ06203 517 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 PCDH1Q08174 1060 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 DZIP1LQ8IYY4 767 aaKnown RBP9.86□□□□□ -0.83
SMAD4-209ENST00000589941 KLHL23Q8NBE8 558 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 PPM1EQ8WY54 764 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 TRIB2Q92519 343 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 WNT8BQ93098 351 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 ASB2Q96Q27 587 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 OSBPL7Q9BZF2 842 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 CLEC4MQ9H2X3 399 aaPredicted RBP9.86□□□□□ -0.83
SMAD4-209ENST00000589941 OSGEPQ9NPF4 335 aa9.86□□□□□ -0.83
SMAD4-209ENST00000589941 ANP32CO43423 234 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 ALX3O95076 343 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 IL1R1P14778 569 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 CAPN2P17655 700 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 ATP2B2Q01814 1243 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 COL19A1Q14993 1142 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 SUZ12Q15022 739 aaKnown RBP9.85□□□□□ -0.83
SMAD4-209ENST00000589941 MIGA2Q7L4E1 593 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 EPHX3Q9H6B9 360 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 THEGQ9P2T0 379 aa9.85□□□□□ -0.83
SMAD4-209ENST00000589941 RPAP1Q9BWH6 1393 aaPredicted RBP9.85□□□□□ -0.83
SMAD4-209ENST00000589941 USP34Q70CQ2 3546 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 MSTNO14793 375 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 TAF5LO75529 589 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 PPP2R1AP30153 589 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 NLRP12P59046 1061 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 SMAD3P84022 425 aaKnown RBP9.84□□□□□ -0.83
SMAD4-209ENST00000589941 TAGLNQ01995 201 aaKnown RBP9.84□□□□□ -0.83
SMAD4-209ENST00000589941 CHRNDQ07001 517 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 C19orf57Q0VDD7 668 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 TMCO4Q5TGY1 634 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 FBXO33Q7Z6M2 555 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 UBASH3BQ8TF42 649 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 LBHD1Q9BQE6 289 aaPredicted RBP9.84□□□□□ -0.83
SMAD4-209ENST00000589941 ANP32EQ9BTT0 268 aa9.84□□□□□ -0.83
SMAD4-209ENST00000589941 PHAXQ9H814 394 aaKnown RBP9.84□□□□□ -0.83
SMAD4-209ENST00000589941 TTF2Q9UNY4 1162 aaKnown RBP9.84□□□□□ -0.83
SMAD4-209ENST00000589941 CFAP54Q96N23 3096 aa9.83□□□□□ -0.84
SMAD4-209ENST00000589941 FAM86C2PA6NEL3 165 aa9.83□□□□□ -0.84
SMAD4-209ENST00000589941 NOS3P29474 1203 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms