RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CCDC84Q86UT8 332 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 CCDC83Q8IWF9 413 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 ANKRD13AQ8IZ07 590 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 C2orf69Q8N8R5 385 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 NECAB1Q8N987 351 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 SMC1BQ8NDV3 1235 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.17□□□□□ -1.42
LIG3-210ENST00000588109 CTCFLQ8NI51 663 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 ANKS1AQ92625 1134 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 ZNF837Q96EG3 531 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 ZNF274Q96GC6 653 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 IPO9Q96P70 1041 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 TMEM47Q9BQJ4 181 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 MYL10Q9BUA6 226 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 ELP3Q9H9T3 547 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 NYAP2Q9P242 653 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 ZNF112Q9UJU3 913 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 DOCK1Q14185 1865 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 GREB1LQ9C091 1923 aaPredicted RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 CCDC196A0A1B0GTZ2 297 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 A0A1W2PNR3 127 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 UBE2Q2LH0YL09 131 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 PFKFB2O60825 505 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 CDKL5O76039 1030 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 TOMM70O94826 608 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 PARP1P09874 1014 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 GUCY1A2P33402 732 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 RCAN1P53805 252 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 EVCP57679 992 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 FKBP1BP68106 108 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 INSM1Q01101 510 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 FMR1Q06787 632 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIG3-210ENST00000588109 SCRN1Q12765 414 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 VGLL4Q14135 290 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 ZYXQ15942 572 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 SWI5Q1ZZU3 235 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 CCDC96Q2M329 555 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 NOL9Q5SY16 702 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 SLFN13Q68D06 897 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 GPR161Q8N6U8 529 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 FANCBQ8NB91 859 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 GTF3C6Q969F1 213 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 CNTNAP3BQ96NU0 1288 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 COL25A1Q9BXS0 654 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 CNTNAP3Q9BZ76 1288 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 CRISPLD1Q9H336 500 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 NCOA5Q9HCD5 579 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 GBA2Q9HCG7 927 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 RBM28Q9NW13 759 aaKnown RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 ZHX2Q9Y6X8 837 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 MYH4Q9Y623 1939 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 FRMPD2Q68DX3 1309 aaPredicted RBP6.16□□□□□ -1.42
LIG3-210ENST00000588109 PAPPA2Q9BXP8 1791 aa6.16□□□□□ -1.42
LIG3-210ENST00000588109 A0A1W2PRG0 241 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 TRIM75PA6NK02 468 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 F5H6K3 240 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 GPR25O00155 361 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 GOLGA8HP0CJ92 632 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 PDHBP11177 359 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 PTPRAP18433 802 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 IGFBP4P22692 258 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 ECE1P42892 770 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SLC1A4P43007 532 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 NOVP48745 357 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 GNAQP50148 359 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 USP14P54578 494 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 AKAP17AQ02040 695 aaKnown RBP6.15□□□□□ -1.42
LIG3-210ENST00000588109 KLRC3Q07444 240 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 TROAPQ12815 778 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SPP2Q13103 211 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 IKQ13123 557 aaPredicted RBP6.15□□□□□ -1.42
LIG3-210ENST00000588109 GRM4Q14833 912 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 PPP2R5BQ15173 497 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 MAP3K11Q16584 847 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 NLRP8Q86W28 1048 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 ERO1BQ86YB8 467 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SPICE1Q8N0Z3 855 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 STAG2Q8N3U4 1231 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 ZNF280CQ8ND82 737 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 GMCL1P1Q8NEA9 526 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 ACER1Q8TDN7 264 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 ZDHHC1Q8WTX9 485 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 DCAF4Q8WV16 495 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 MKL1Q969V6 931 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 CLMNQ96JQ2 1002 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 TMOD4Q9NZQ9 345 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SYNPO2Q9UMS6 1093 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SMC3Q9UQE7 1217 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 TMX2Q9Y320 296 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 SNCAIPQ9Y6H5 919 aa6.15□□□□□ -1.42
LIG3-210ENST00000588109 OTOFQ9HC10 1997 aa6.15□□□□□ -1.43
LIG3-210ENST00000588109 PTPDC1A2A3K4 754 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 UNCXA6NJT0 531 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 KLRF2D3W0D1 207 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 EML1O00423 815 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 NDUFB10O96000 172 aa6.14□□□□□ -1.43
LIG3-210ENST00000588109 BMP3P12645 472 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms