RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 ACTN1P12814 892 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 PTPN11Q06124 597 aaPredicted RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 HIC1Q14526 733 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 SKIV2LQ15477 1246 aaKnown RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 ZSCAN10Q96SZ4 725 aaPredicted RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 RMDN3Q96TC7 470 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 MPHOSPH6Q99547 160 aaKnown RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 RNF41Q9H4P4 317 aaPredicted RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 KAT14Q9H8E8 782 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 HDAC6Q9UBN7 1215 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 DDX41Q9UJV9 622 aaKnown RBP13.59□□□□□ -0.23
LIG3-207ENST00000586119 NOD1Q9Y239 953 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 LAMA4Q16363 1823 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 ABCB11O95342 1321 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 RAD50Q92878 1312 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 DHX16O60231 1041 aaKnown RBP13.58□□□□□ -0.24
LIG3-207ENST00000586119 PPP1R11O60927 126 aaPredicted RBP13.58□□□□□ -0.24
LIG3-207ENST00000586119 NBNO60934 754 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 RFC2P35250 354 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 DEFB103AP81534 67 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 GRB10Q13322 594 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 BFSP2Q13515 415 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 SLC35G1Q2M3R5 365 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 CHD1LQ86WJ1 897 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 PHOSPHO2Q8TCD6 241 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 NSUN6Q8TEA1 469 aaKnown RBP13.58□□□□□ -0.24
LIG3-207ENST00000586119 SLC9A7Q96T83 725 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 BCAS3Q9H6U6 928 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 PNMA2Q9UL42 364 aa13.58□□□□□ -0.24
LIG3-207ENST00000586119 B4DLN1 442 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 LPXNO60711 386 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 RGS20O76081 388 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 CFBP00751 764 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 NR3C2P08235 984 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 ZNF286BP0CG31 522 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 POU3F3P20264 500 aaPredicted RBP13.57□□□□□ -0.24
LIG3-207ENST00000586119 PSEN2P49810 448 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 MRPL12P52815 198 aaKnown RBP13.57□□□□□ -0.24
LIG3-207ENST00000586119 WDR5P61964 334 aaKnown RBP13.57□□□□□ -0.24
LIG3-207ENST00000586119 STXBP2Q15833 593 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 ARHGEF16Q5VV41 709 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 TRAF7Q6Q0C0 670 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 CYB5R4Q7L1T6 521 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 IQCA1Q86XH1 822 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 FBXO11Q86XK2 927 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 TICAM2Q86XR7 235 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 GPKOWQ92917 476 aaPredicted RBP eCLIP13.57□□□□□ -0.24
LIG3-207ENST00000586119 OSBPL3Q9H4L5 887 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 PXMP2Q9NR77 195 aa13.57□□□□□ -0.24
LIG3-207ENST00000586119 BRWD1Q9NSI6 2320 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 TRANK1O15050 2925 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 TLL1O43897 1013 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 PARP1P09874 1014 aaKnown RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 CKBP12277 381 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 MYCLP12524 364 aaPredicted RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 CASTP20810 708 aaKnown RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 HOXA13P31271 388 aaPredicted RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 SP2Q02086 613 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 NUCB1Q02818 461 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 TRIM71Q2Q1W2 868 aaKnown RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 ASPRV1Q53RT3 343 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 LRRC8DQ7L1W4 858 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 SESTD1Q86VW0 696 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 IL31RAQ8NI17 732 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 IWS1Q96ST2 819 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 RWDD1Q9H446 243 aaPredicted RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 SENP2Q9HC62 589 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 DIAPH3Q9NSV4 1193 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 GTF2IRD1Q9UHL9 959 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 MRPL11Q9Y3B7 192 aaKnown RBP13.56□□□□□ -0.24
LIG3-207ENST00000586119 XIRP2A4UGR9 3374 aa13.56□□□□□ -0.24
LIG3-207ENST00000586119 DOCK5Q9H7D0 1870 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 KIF28PB7ZC32 967 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 HAS3O00219 553 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 GTPBP6O43824 516 aaPredicted RBP13.55□□□□□ -0.24
LIG3-207ENST00000586119 EIF3JO75822 258 aaKnown RBP13.55□□□□□ -0.24
LIG3-207ENST00000586119 SELPP16109 830 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 MFAP1P55081 439 aaKnown RBP13.55□□□□□ -0.24
LIG3-207ENST00000586119 MBTPS1Q14703 1052 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 MFSD10Q14728 455 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 SEC23AQ15436 765 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 DGKDQ16760 1214 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 KIAA0753Q2KHM9 967 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 ZNF618Q5T7W0 954 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 FAM117BQ6P1L5 589 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 MCF2L2Q86YR7 1114 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 IL27Q8NEV9 243 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 AFAP1L1Q8TED9 768 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 GDPD5Q8WTR4 605 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 DSCC1Q9BVC3 393 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 OSBPL7Q9BZF2 842 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 TSPYL2Q9H2G4 693 aaPredicted RBP13.55□□□□□ -0.24
LIG3-207ENST00000586119 MAD2L2Q9UI95 211 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 MTUS1Q9ULD2 1270 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 SUPT16HQ9Y5B9 1047 aaKnown RBP13.55□□□□□ -0.24
LIG3-207ENST00000586119 MRVI1Q9Y6F6 885 aa13.55□□□□□ -0.24
LIG3-207ENST00000586119 KLRF2D3W0D1 207 aa13.54□□□□□ -0.24
LIG3-207ENST00000586119 CXCL10P02778 98 aa13.54□□□□□ -0.24
LIG3-207ENST00000586119 KCNJ6P48051 423 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms