RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 FSTL1Q12841 308 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 CCDC144BQ3MJ40 725 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 LRFN4Q6PJG9 635 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 ZNF574Q6ZN55 896 aaPredicted RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 WAPLQ7Z5K2 1190 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 REXO1Q8N1G1 1221 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 BAHD1Q8TBE0 780 aaPredicted RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 INTS4Q96HW7 963 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 SMG5Q9UPR3 1016 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 PCDHGB7Q9Y5F8 929 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 NHSQ6T4R5 1651 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 DHX57Q6P158 1386 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 ATP7BP35670 1465 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 MINDY4BA8MYZ0 360 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 AGRPO00253 132 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 RGS13O14921 159 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 MYO1BO43795 1136 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 NRDCO43847 1150 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 NEFMP07197 916 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 NMIQ13287 307 aaPredicted RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 CT47A1Q5JQC4 288 aaPredicted RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 IQCEQ6IPM2 695 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 SPRED2Q7Z698 418 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 GATAD2BQ8WXI9 593 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 SRPK1Q96SB4 655 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 DIS3Q9Y2L1 958 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 YTHDC2Q9H6S0 1430 aaKnown RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 EOMESO95936 686 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 HLTFQ14527 1009 aaKnown RBP eCLIP2.53□□□□□ -23e-6■■□□□ 11.8
SMCHD1-211ENST00000584897 NBPF6Q5VWK0 638 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 POMZP3Q6PJE2 187 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 LINC00116Q8NCU8 138 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 WDR48Q8TAF3 677 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 ANAPC16Q96DE5 110 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 FCRL2Q96LA5 508 aaPredicted RBP2.53□□□□□ -2
SMCHD1-211ENST00000584897 NBPF4Q96M43 638 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 FERD3LQ96RJ6 166 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 STRIP2Q9ULQ0 834 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 MSRB2Q9Y3D2 182 aa2.53□□□□□ -2
SMCHD1-211ENST00000584897 NOP56O00567 594 aaKnown RBP2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 DLGAP3O95886 979 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 CNGA1P29973 690 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 MCM4P33991 863 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 SRSF3P84103 164 aaKnown RBP2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 CYP4F8P98187 520 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 MAP3K11Q16584 847 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 NKPD1Q17RQ9 610 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 ZC3H18Q86VM9 953 aaKnown RBP2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 MCF2L2Q86YR7 1114 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 SLFN12Q8IYM2 578 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 SLC39A13Q96H72 371 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 KREMEN1Q96MU8 473 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 SPON2Q9BUD6 331 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 OSBPL2Q9H1P3 480 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 ATP13A1Q9HD20 1204 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 PLAGL2Q9UPG8 496 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 USP19O94966 1318 aa2.53□□□□□ -2.01
SMCHD1-211ENST00000584897 AKAP12Q02952 1782 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 GRIN3BO60391 1043 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 NPHS1O60500 1241 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SLITRK5O94991 958 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CELA3BP08861 270 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 LRPPRCP42704 1394 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 GTF2A2P52657 109 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CORO7P57737 925 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SYT17Q9BSW7 474 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CHMP4AQ9BY43 222 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 PIF1Q9H611 641 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF552Q9H707 407 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 PARD6AQ9NPB6 346 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 KLHL3Q9UH77 587 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 ABCC6O95255 1503 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 WASHC2CQ9Y4E1 1318 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 PPM1BO75688 479 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 DLG4P78352 724 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CAMK2GQ13555 558 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 RAB3GAP1Q15042 981 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 EGFLAMQ63HQ2 1017 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SDE2Q6IQ49 451 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CNKSR3Q6P9H4 555 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 LILRA6Q6PI73 481 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 PEX11GQ96HA9 241 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 TEPSINQ96N21 525 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 IPO9Q96P70 1041 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 YIPF4Q9BSR8 244 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 MKRN2Q9H000 416 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 RNF38Q9H0F5 515 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 AP5M1Q9H0R1 490 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 GEMIN8Q9NWZ8 242 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 GMIPQ9P107 970 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SRRDQ9UH36 339 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 RBBP6Q7Z6E9 1792 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 LRRC37A3O60309 1634 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CCDC144AA2RUR9 1427 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 MAFGO15525 162 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SYPP08247 313 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 KCNC1P48547 511 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 HSP90AB2PQ58FF8 381 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 PRR23BQ6ZRT6 265 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 CCDC144CPQ8IYA2 1237 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms