RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 RIOX1Q9H6W3 641 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 DDX41Q9UJV9 622 aaKnown RBP23.77■■□□□ 1.4
SHMT1-209ENST00000582653 MYH6P13533 1939 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 NR3C2P08235 984 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 HSD17B4P51659 736 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 ARHGAP1Q07960 439 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 COL9A3Q14050 684 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-209ENST00000582653 ESYT1Q9BSJ8 1104 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 PXMP2Q9NR77 195 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 SLC4A7Q9Y6M7 1214 aa23.76■■□□□ 1.39
SHMT1-209ENST00000582653 PITPNM1O00562 1244 aa23.75■■□□□ 1.39
SHMT1-209ENST00000582653 CASTP20810 708 aaKnown RBP23.75■■□□□ 1.39
SHMT1-209ENST00000582653 HOXA13P31271 388 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-209ENST00000582653 TRAF1Q13077 416 aa23.75■■□□□ 1.39
SHMT1-209ENST00000582653 CATIPQ7Z7H3 387 aa23.75■■□□□ 1.39
SHMT1-209ENST00000582653 PIBF1Q8WXW3 757 aa23.75■■□□□ 1.39
SHMT1-209ENST00000582653 SCN10AQ9Y5Y9 1956 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 MMP3P08254 477 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 IQCF3P0C7M6 154 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 RFC2P35250 354 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 RETREG2Q8NC44 543 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 EMID1Q96A84 441 aaPredicted RBP23.74■■□□□ 1.39
SHMT1-209ENST00000582653 MYL10Q9BUA6 226 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 LY9Q9HBG7 655 aa23.74■■□□□ 1.39
SHMT1-209ENST00000582653 SLC27A2O14975 620 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 BFSP2Q13515 415 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 LAMC2Q13753 1193 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 SESTD1Q86VW0 696 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 KAT2BQ92831 832 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 GAS2L1Q99501 681 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-209ENST00000582653 SLC28A3Q9HAS3 691 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 PRUNE2Q8WUY3 3088 aa23.73■■□□□ 1.39
SHMT1-209ENST00000582653 PNMA6FA0A0J9YX94 578 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 PRC1O43663 620 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 MYCLP12524 364 aaPredicted RBP23.72■■□□□ 1.39
SHMT1-209ENST00000582653 CHMP4BP1P59074 171 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 DGKDQ16760 1214 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 CENPQQ7L2Z9 268 aaPredicted RBP23.72■■□□□ 1.39
SHMT1-209ENST00000582653 DEFB128Q7Z7B8 93 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 VSIG10LQ86VR7 867 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 NKX2-4Q9H2Z4 354 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 PRDM12Q9H4Q4 367 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 YBX2Q9Y2T7 364 aaKnown RBP23.72■■□□□ 1.39
SHMT1-209ENST00000582653 MRVI1Q9Y6F6 885 aa23.72■■□□□ 1.39
SHMT1-209ENST00000582653 ZBBXA8MT70 800 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 NECTIN1Q15223 517 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 PTGISQ16647 500 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 CREB3L3Q68CJ9 461 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 KCNV1Q6PIU1 500 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 CASC1Q6TDU7 716 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 ZNF654Q8IZM8 581 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 ZFP91Q96JP5 570 aaPredicted RBP23.71■■□□□ 1.39
SHMT1-209ENST00000582653 PDCD2LQ9BRP1 358 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 ANO2Q9NQ90 1003 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 NOD1Q9Y239 953 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 PCDHA11Q9Y5I1 949 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 VCANP13611 3396 aa23.71■■□□□ 1.39
SHMT1-209ENST00000582653 ACTN1P12814 892 aa23.7■■□□□ 1.38
SHMT1-209ENST00000582653 ATP2A2P16615 1042 aaKnown RBP23.7■■□□□ 1.38
SHMT1-209ENST00000582653 RABGGTBP53611 331 aa23.7■■□□□ 1.38
SHMT1-209ENST00000582653 FCHSD1Q86WN1 690 aa23.7■■□□□ 1.38
SHMT1-209ENST00000582653 IL31RAQ8NI17 732 aa23.7■■□□□ 1.38
SHMT1-209ENST00000582653 GCOM1H8Y6P7 765 aaPredicted RBP23.69■■□□□ 1.38
SHMT1-209ENST00000582653 PPFIA4O75335 1185 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 RGS20O76081 388 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 POLR2MP0CAP2 368 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 TGFB3P10600 412 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 MCM5P33992 734 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 PGM5Q15124 567 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 BMP2KLQ5H9B9 411 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 MYSM1Q5VVJ2 828 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 GDF6Q6KF10 455 aaPredicted RBP23.69■■□□□ 1.38
SHMT1-209ENST00000582653 DHX37Q8IY37 1157 aaKnown RBP23.69■■□□□ 1.38
SHMT1-209ENST00000582653 PPTC7Q8NI37 304 aa23.69■■□□□ 1.38
SHMT1-209ENST00000582653 BAZ2BQ9UIF8 2168 aaKnown RBP23.68■■□□□ 1.38
SHMT1-209ENST00000582653 SH2B2O14492 632 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-209ENST00000582653 SORBS3O60504 671 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 RXRAP19793 462 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 NFXL1Q6ZNB6 911 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 USP38Q8NB14 1042 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 CTCFLQ8NI51 663 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-209ENST00000582653 CAGE1Q8TC20 777 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 PHOSPHO2Q8TCD6 241 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 CTAGE1Q96RT6 745 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 MAP3K14Q99558 947 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 KATNAL1Q9BW62 490 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 LRRC2Q9BYS8 371 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 GTF2IRD1Q9UHL9 959 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 KIAA1217Q5T5P2 1943 aa23.68■■□□□ 1.38
SHMT1-209ENST00000582653 DDAH1O94760 285 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 ADGRE1Q14246 886 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 RAB11FIP4Q86YS3 637 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 CMTR1Q8N1G2 835 aaKnown RBP23.67■■□□□ 1.38
SHMT1-209ENST00000582653 CCDC155Q8N6L0 562 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 AFAP1L1Q8TED9 768 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 TMEM87BQ96K49 555 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 FTOQ9C0B1 505 aaKnown RBP eCLIP23.67■■□□□ 1.38
SHMT1-209ENST00000582653 HDAC6Q9UBN7 1215 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 CHD9Q3L8U1 2897 aa23.67■■□□□ 1.38
SHMT1-209ENST00000582653 CCDC69A6NI79 296 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms