RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 AFG1LQ8WV93 481 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 RMDN3Q96TC7 470 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 KRT23Q9C075 422 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 JMJD4Q9H9V9 463 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 COL20A1Q9P218 1284 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 MRPL11Q9Y3B7 192 aaKnown RBP12.38□□□□□ -0.43
RFFL-209ENST00000581265 BDP1A6H8Y1 2624 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 EIF3JO75822 258 aaKnown RBP12.37□□□□□ -0.43
RFFL-209ENST00000581265 PARP1P09874 1014 aaKnown RBP12.37□□□□□ -0.43
RFFL-209ENST00000581265 POU3F3P20264 500 aaPredicted RBP12.37□□□□□ -0.43
RFFL-209ENST00000581265 CASTP20810 708 aaKnown RBP12.37□□□□□ -0.43
RFFL-209ENST00000581265 ARHGAP1Q07960 439 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 LY6KQ17RY6 165 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 TMEM67Q5HYA8 995 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 FBXO11Q86XK2 927 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 PPP1R13LQ8WUF5 828 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 KAT2BQ92831 832 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 CTAGE1Q96RT6 745 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 CNNM2Q9H8M5 875 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 VAT1LQ9HCJ6 419 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 DDX41Q9UJV9 622 aaKnown RBP12.37□□□□□ -0.43
RFFL-209ENST00000581265 NOD1Q9Y239 953 aa12.37□□□□□ -0.43
RFFL-209ENST00000581265 TLL1O43897 1013 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 NR3C2P08235 984 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 MMP3P08254 477 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 GHRHRQ02643 423 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 PTGISQ16647 500 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 CAGE1Q8TC20 777 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 HLA-CQ95604 372 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 EMID1Q96A84 441 aaPredicted RBP12.36□□□□□ -0.43
RFFL-209ENST00000581265 SLC9A7Q96T83 725 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 UBAC1Q9BSL1 405 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 AMNQ9BXJ7 453 aa12.36□□□□□ -0.43
RFFL-209ENST00000581265 MAP3K20Q9NYL2 800 aaKnown RBP12.36□□□□□ -0.43
RFFL-209ENST00000581265 PRR33A8MZF0 331 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 KLRF2D3W0D1 207 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 PI4K2BG5E9Z4 385 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 OPLAHO14841 1288 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 DHX16O60231 1041 aaKnown RBP12.35□□□□□ -0.43
RFFL-209ENST00000581265 BAIAP3O94812 1187 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 CA3P07451 260 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 HSD17B4P51659 736 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 RBL2Q08999 1139 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 LAMC2Q13753 1193 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 GPNMBQ14956 572 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 SEC23AQ15436 765 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 DGKDQ16760 1214 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 IFIT1BQ5T764 474 aaKnown RBP12.35□□□□□ -0.43
RFFL-209ENST00000581265 ARHGEF16Q5VV41 709 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 GDF6Q6KF10 455 aaPredicted RBP12.35□□□□□ -0.43
RFFL-209ENST00000581265 STOX1Q6ZVD7 989 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 HERC6Q8IVU3 1022 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 STAG2Q8N3U4 1231 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 SAMD3Q8N6K7 520 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 CCDC155Q8N6L0 562 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 AFAP1L1Q8TED9 768 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 MTMR8Q96EF0 704 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 FTOQ9C0B1 505 aaKnown RBP eCLIP12.35□□□□□ -0.43
RFFL-209ENST00000581265 PXMP2Q9NR77 195 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 MTCH2Q9Y6C9 303 aa12.35□□□□□ -0.43
RFFL-209ENST00000581265 PRRC2BQ5JSZ5 2229 aaKnown RBP12.34□□□□□ -0.43
RFFL-209ENST00000581265 CHD7Q9P2D1 2997 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 TET1Q8NFU7 2136 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 GBF1Q92538 1859 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 SCN5AQ14524 2016 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 PALM3A6NDB9 673 aaPredicted RBP12.34□□□□□ -0.43
RFFL-209ENST00000581265 KIF28PB7ZC32 967 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 RFXAPO00287 272 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 PPFIA4O75335 1185 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 PARNO95453 639 aaKnown RBP12.34□□□□□ -0.43
RFFL-209ENST00000581265 CFBP00751 764 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 SELPP16109 830 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 EIF2AK2P19525 551 aaKnown RBP12.34□□□□□ -0.43
RFFL-209ENST00000581265 CHMP4BP1P59074 171 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 CHST3Q7LGC8 479 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 EXOC6Q8TAG9 804 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 C11orf16Q9NQ32 467 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 GTF2IRD1Q9UHL9 959 aa12.34□□□□□ -0.43
RFFL-209ENST00000581265 HAS3O00219 553 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 ZBTB5O15062 677 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 PPP1R11O60927 126 aaPredicted RBP12.33□□□□□ -0.44
RFFL-209ENST00000581265 RGS20O76081 388 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 TGFB3P10600 412 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 HOXD8P13378 290 aaPredicted RBP12.33□□□□□ -0.44
RFFL-209ENST00000581265 TAP1Q03518 808 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 KCNV1Q6PIU1 500 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 VSIG10LQ86VR7 867 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 C7orf31Q8N865 590 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 PPTC7Q8NI37 304 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 DHX38Q92620 1227 aaKnown RBP12.33□□□□□ -0.44
RFFL-209ENST00000581265 KHSRPQ92945 711 aaKnown RBP eCLIP12.33□□□□□ -0.44
RFFL-209ENST00000581265 PDCD2LQ9BRP1 358 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 IL25Q9H293 177 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 CERS4Q9HA82 394 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 HDAC6Q9UBN7 1215 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 MAD2L2Q9UI95 211 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 PCDHA1Q9Y5I3 950 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 MRVI1Q9Y6F6 885 aa12.33□□□□□ -0.44
RFFL-209ENST00000581265 TRIP12Q14669 1992 aaPredicted RBP12.32□□□□□ -0.44
RFFL-209ENST00000581265 F2P00734 622 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms