RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 YBX3P16989 372 aaKnown RBP eCLIP9.55□□□□□ -0.88
SS18-214ENST00000580003 CDR1P51861 262 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 C2orf27AQ580R0 203 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 IFNL3Q8IZI9 196 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 MZB1Q8WU39 189 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 ALG3Q92685 438 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 TSPAN17Q96FV3 270 aa9.55□□□□□ -0.88
SS18-214ENST00000580003 SMG5Q9UPR3 1016 aaKnown RBP9.55□□□□□ -0.88
SS18-214ENST00000580003 MRPS23Q9Y3D9 190 aaKnown RBP9.55□□□□□ -0.88
SS18-214ENST00000580003 MSCO60682 206 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 KRT1P04264 644 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 PFKLP17858 780 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 GPR85P60893 370 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 TARBP2Q15633 366 aaKnown RBP9.54□□□□□ -0.88
SS18-214ENST00000580003 LBX2Q6XYB7 198 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 LILRB2Q8N423 598 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 SEC14L1Q92503 715 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 SIT1Q9Y3P8 196 aa9.54□□□□□ -0.88
SS18-214ENST00000580003 AQP7O14520 342 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 SLC6A11P48066 632 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 EPHB3P54753 998 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 CHRNA2Q15822 529 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 KIZQ2M2Z5 673 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 MAMDC2Q7Z304 686 aaPredicted RBP9.53□□□□□ -0.88
SS18-214ENST00000580003 JMYQ8N9B5 988 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.53□□□□□ -0.88
SS18-214ENST00000580003 PTPRN2Q92932 1015 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 SIGLEC10Q96LC7 697 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 EPB41L1Q9H4G0 881 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 CD320Q9NPF0 282 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 CNOT6Q9ULM6 557 aaKnown RBP9.53□□□□□ -0.88
SS18-214ENST00000580003 IRAK3Q9Y616 596 aa9.53□□□□□ -0.88
SS18-214ENST00000580003 CCDC163A0A0D9SF12 145 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 NPIPB6E9PJ23 425 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 DGKIO75912 1065 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 NCKAP1LP55160 1127 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 GABREP78334 506 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 KCNA10Q16322 511 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 ALG1Q9BT22 464 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 PCDHA5Q9Y5H7 936 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 PTCH2Q9Y6C5 1203 aa9.52□□□□□ -0.89
SS18-214ENST00000580003 DBX1A6NMT0 343 aa9.51□□□□□ -0.89
SS18-214ENST00000580003 APPP05067 770 aa9.51□□□□□ -0.89
SS18-214ENST00000580003 KISS1RQ969F8 398 aaPredicted RBP9.51□□□□□ -0.89
SS18-214ENST00000580003 BCAS3Q9H6U6 928 aa9.51□□□□□ -0.89
SS18-214ENST00000580003 TRAF6Q9Y4K3 522 aa9.51□□□□□ -0.89
SS18-214ENST00000580003 ASXL2Q76L83 1435 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 RFXAPO00287 272 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 SGSM2O43147 1006 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 BUB1BO60566 1050 aaPredicted RBP9.5□□□□□ -0.89
SS18-214ENST00000580003 NCAM1P13591 858 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 NAT1P18440 290 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 GRK2P25098 689 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 GRK3P35626 688 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 TOX2Q96NM4 488 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 RNF38Q9H0F5 515 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 PPARGC1AQ9UBK2 798 aaKnown RBP9.5□□□□□ -0.89
SS18-214ENST00000580003 IRS2Q9Y4H2 1338 aa9.5□□□□□ -0.89
SS18-214ENST00000580003 HGSO14964 777 aaPredicted RBP9.49□□□□□ -0.89
SS18-214ENST00000580003 C6orf222P0C671 652 aaPredicted RBP9.49□□□□□ -0.89
SS18-214ENST00000580003 LINC00310P59036 64 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 STEAP3Q658P3 488 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 MILR1Q7Z6M3 343 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 MTDHQ86UE4 582 aaKnown RBP9.49□□□□□ -0.89
SS18-214ENST00000580003 IGDCC3Q8IVU1 814 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 JAM3Q9BX67 310 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 PIF1Q9H611 641 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 PALD1Q9ULE6 856 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 FAN1Q9Y2M0 1017 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 KCTD3Q9Y597 815 aa9.49□□□□□ -0.89
SS18-214ENST00000580003 FAM47E-STBD1D6RA91 191 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 KRIT1O00522 736 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 MAFKO60675 156 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 SOD2P04179 222 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 ASGR2P07307 311 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 PMLP29590 882 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 ZNF385BQ569K4 471 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 CDIP1Q9H305 208 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 NDOR1Q9UHB4 597 aa9.48□□□□□ -0.89
SS18-214ENST00000580003 IRS4O14654 1257 aaPredicted RBP9.47□□□□□ -0.89
SS18-214ENST00000580003 FBLN1P23142 703 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 GUCY1A3Q02108 690 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 SSPNQ14714 243 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 CIAPIN1Q6FI81 312 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 AMIGO3Q86WK7 504 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 SH3TC2Q8TF17 1288 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.47□□□□□ -0.89
SS18-214ENST00000580003 KCNJ15Q99712 375 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 PLA2G2DQ9UNK4 145 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 ZNF652Q9Y2D9 606 aa9.47□□□□□ -0.89
SS18-214ENST00000580003 NUAK1O60285 661 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 EFCAB14O75071 495 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 GNAT1P11488 350 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 PI3P19957 117 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 SPIRE1Q08AE8 756 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 PAK1Q13153 545 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 EMC4Q5J8M3 183 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 ZSCAN18Q8TBC5 510 aaPredicted RBP9.46□□□□□ -0.9
SS18-214ENST00000580003 PCDHB4Q9Y5E5 795 aa9.46□□□□□ -0.9
SS18-214ENST00000580003 CPA5Q8WXQ8 436 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 222.5 ms