RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GDF6Q6KF10 455 aaPredicted RBP24.57■■□□□ 1.52
VPS53-216ENST00000574029 CAGE1Q8TC20 777 aa24.57■■□□□ 1.52
VPS53-216ENST00000574029 UBAC1Q9BSL1 405 aa24.57■■□□□ 1.52
VPS53-216ENST00000574029 FTOQ9C0B1 505 aaKnown RBP eCLIP24.57■■□□□ 1.52
VPS53-216ENST00000574029 CHD7Q9P2D1 2997 aa24.57■■□□□ 1.52
VPS53-216ENST00000574029 EIF3JO75822 258 aaKnown RBP24.56■■□□□ 1.52
VPS53-216ENST00000574029 BAIAP3O94812 1187 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 EIF2AK2P19525 551 aaKnown RBP24.56■■□□□ 1.52
VPS53-216ENST00000574029 POU3F3P20264 500 aaPredicted RBP24.56■■□□□ 1.52
VPS53-216ENST00000574029 CHMP4BP1P59074 171 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 CHST3Q7LGC8 479 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 STAG2Q8N3U4 1231 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 CCDC155Q8N6L0 562 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 AFAP1L1Q8TED9 768 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 EMID1Q96A84 441 aaPredicted RBP24.56■■□□□ 1.52
VPS53-216ENST00000574029 AMNQ9BXJ7 453 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 PXMP2Q9NR77 195 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 PTPRSQ13332 1948 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 TET1Q8NFU7 2136 aa24.56■■□□□ 1.52
VPS53-216ENST00000574029 OPLAHO14841 1288 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 NR3C2P08235 984 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 HSD17B4P51659 736 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 RBL2Q08999 1139 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 GPNMBQ14956 572 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 SEC23AQ15436 765 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 DGKDQ16760 1214 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 IFIT1BQ5T764 474 aaKnown RBP24.55■■□□□ 1.52
VPS53-216ENST00000574029 HERC6Q8IVU3 1022 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 MTMR8Q96EF0 704 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 IL25Q9H293 177 aa24.55■■□□□ 1.52
VPS53-216ENST00000574029 CFBP00751 764 aa24.54■■□□□ 1.52
VPS53-216ENST00000574029 EXOC6Q8TAG9 804 aa24.54■■□□□ 1.52
VPS53-216ENST00000574029 ADAMTS19Q8TE59 1207 aa24.54■■□□□ 1.52
VPS53-216ENST00000574029 TSPYL2Q9H2G4 693 aaPredicted RBP24.54■■□□□ 1.52
VPS53-216ENST00000574029 MAP3K20Q9NYL2 800 aaKnown RBP24.54■■□□□ 1.52
VPS53-216ENST00000574029 GTF2IRD1Q9UHL9 959 aa24.54■■□□□ 1.52
VPS53-216ENST00000574029 MYH7BA7E2Y1 1941 aa24.54■■□□□ 1.52
VPS53-216ENST00000574029 KLRF2D3W0D1 207 aa24.53■■□□□ 1.52
VPS53-216ENST00000574029 RFXAPO00287 272 aa24.53■■□□□ 1.52
VPS53-216ENST00000574029 PPP1R11O60927 126 aaPredicted RBP24.53■■□□□ 1.52
VPS53-216ENST00000574029 LAMC2Q13753 1193 aa24.53■■□□□ 1.52
VPS53-216ENST00000574029 DHX38Q92620 1227 aaKnown RBP24.53■■□□□ 1.52
VPS53-216ENST00000574029 MAD2L2Q9UI95 211 aa24.53■■□□□ 1.52
VPS53-216ENST00000574029 MRVI1Q9Y6F6 885 aa24.53■■□□□ 1.52
VPS53-216ENST00000574029 TTC28Q96AY4 2481 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 KIF28PB7ZC32 967 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 SELPP16109 830 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 PSEN2P49810 448 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 TAP1Q03518 808 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 CYB5R4Q7L1T6 521 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 LRRC8DQ7L1W4 858 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 PPTC7Q8NI37 304 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 KATNAL1Q9BW62 490 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 CERS4Q9HA82 394 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 HDAC6Q9UBN7 1215 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 MTCH2Q9Y6C9 303 aa24.52■■□□□ 1.52
VPS53-216ENST00000574029 PALM3A6NDB9 673 aaPredicted RBP24.51■■□□□ 1.51
VPS53-216ENST00000574029 EPOPA6NHQ4 379 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 HAS3O00219 553 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 ZBTB5O15062 677 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 ARHGEF15O94989 841 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 PARNO95453 639 aaKnown RBP24.51■■□□□ 1.51
VPS53-216ENST00000574029 F2P00734 622 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 STOX1Q6ZVD7 989 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 MICALL1Q8N3F8 863 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 SAMD3Q8N6K7 520 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 C7orf31Q8N865 590 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 PDCD2LQ9BRP1 358 aa24.51■■□□□ 1.51
VPS53-216ENST00000574029 RGS20O76081 388 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 CXCL10P02778 98 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 CKBP12277 381 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 HOXD8P13378 290 aaPredicted RBP24.5■■□□□ 1.51
VPS53-216ENST00000574029 KCNJ6P48051 423 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 DHX37Q8IY37 1157 aaKnown RBP24.5■■□□□ 1.51
VPS53-216ENST00000574029 PCDHA1Q9Y5I3 950 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 MUC3AQ02505 3323 aa24.5■■□□□ 1.51
VPS53-216ENST00000574029 GTPBP6O43824 516 aaPredicted RBP24.49■■□□□ 1.51
VPS53-216ENST00000574029 WDR5P61964 334 aaKnown RBP24.49■■□□□ 1.51
VPS53-216ENST00000574029 MFSD10Q14728 455 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 CNKSR3Q6P9H4 555 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 KCNV1Q6PIU1 500 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 VSIG10LQ86VR7 867 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 IL27Q8NEV9 243 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 UHRF1Q96T88 793 aaPredicted RBP24.49■■□□□ 1.51
VPS53-216ENST00000574029 ALG1Q9BT22 464 aa24.49■■□□□ 1.51
VPS53-216ENST00000574029 TLL1O43897 1013 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 NBNO60934 754 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 ZNF286BP0CG31 522 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 MYCLP12524 364 aaPredicted RBP24.48■■□□□ 1.51
VPS53-216ENST00000574029 PTK7Q13308 1070 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 PGM5Q15124 567 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 KIAA0753Q2KHM9 967 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 SLC35G1Q2M3R5 365 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 MYSM1Q5VVJ2 828 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 ARNTL2Q8WYA1 636 aa24.48■■□□□ 1.51
VPS53-216ENST00000574029 COL4A4P53420 1690 aaPredicted RBP24.47■■□□□ 1.51
VPS53-216ENST00000574029 PPFIA4O75335 1185 aa24.47■■□□□ 1.51
VPS53-216ENST00000574029 BMP1P13497 986 aa24.47■■□□□ 1.51
VPS53-216ENST00000574029 GSPT1P15170 499 aaKnown RBP24.47■■□□□ 1.51
VPS53-216ENST00000574029 HOXA13P31271 388 aaPredicted RBP24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms