RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SP8Q8IXZ3 490 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 COA1Q9GZY4 146 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 SWAP70Q9UH65 585 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 MYH7BA7E2Y1 1941 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 QSER1Q2KHR3 1735 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 MYO3BQ8WXR4 1341 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 F8W031 263 aaPredicted RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 FGFR1OPO95684 399 aaKnown RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 HOXA7P31268 230 aaPredicted RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 CASP8Q14790 479 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 KRT26Q7Z3Y9 468 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 GLIS3Q8NEA6 775 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 GJD4Q96KN9 370 aaPredicted RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 LRRC27Q9C0I9 530 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 UBAP1LF5GYI3 381 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 POLRMTO00411 1230 aaKnown RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 IDEP14735 1019 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 GYS2P54840 703 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 KIF5AQ12840 1032 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 DNAJC19Q96DA6 116 aa25.32■■□□□ 1.64
VPS53-211ENST00000571805 FAM207AQ9NSI2 230 aaPredicted RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 DDX25Q9UHL0 483 aaKnown RBP25.32■■□□□ 1.64
VPS53-211ENST00000571805 FOXR2Q6PJQ5 311 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 ADAM21Q9UKJ8 722 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 LCA5LO95447 670 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 LRRC41Q15345 812 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 CCDC84Q86UT8 332 aaPredicted RBP25.31■■□□□ 1.64
VPS53-211ENST00000571805 CUL5Q93034 780 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 MTMR8Q96EF0 704 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 RPGRIP1Q96KN7 1286 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 USP40Q9NVE5 1235 aa25.31■■□□□ 1.64
VPS53-211ENST00000571805 GREB1LQ9C091 1923 aaPredicted RBP25.31■■□□□ 1.64
VPS53-211ENST00000571805 PPEF1O14829 653 aaPredicted RBP25.3■■□□□ 1.64
VPS53-211ENST00000571805 SLC16A2P36021 539 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 SPA17Q15506 151 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 TMC4Q7Z404 712 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 C2CD5Q86YS7 1000 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 SECISBP2LQ93073 1101 aaKnown RBP25.3■■□□□ 1.64
VPS53-211ENST00000571805 CAPZA3Q96KX2 299 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 TSGA10Q9BZW7 698 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 MACROD2A1Z1Q3 448 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 MRPL12P52815 198 aaKnown RBP25.3■■□□□ 1.64
VPS53-211ENST00000571805 GPS2Q13227 327 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 GJA10Q969M2 543 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 MMRN2Q9H8L6 949 aa25.3■■□□□ 1.64
VPS53-211ENST00000571805 USP17L10C9JJH3 530 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 ZBTB5O15062 677 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 EIF3JO75822 258 aaKnown RBP25.29■■□□□ 1.64
VPS53-211ENST00000571805 CKAP4Q07065 602 aaKnown RBP25.29■■□□□ 1.64
VPS53-211ENST00000571805 MXD3Q9BW11 206 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 ATF5Q9Y2D1 282 aaPredicted RBP25.29■■□□□ 1.64
VPS53-211ENST00000571805 PCDHA13Q9Y5I0 950 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 MYH4Q9Y623 1939 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 PDE2AO00408 941 aaPredicted RBP25.29■■□□□ 1.64
VPS53-211ENST00000571805 ZNF185O15231 689 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 ZCWPW2Q504Y3 356 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 GPATCH4Q5T3I0 446 aaKnown RBP25.29■■□□□ 1.64
VPS53-211ENST00000571805 NEK11Q8NG66 645 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 BAP1Q92560 729 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 EXOC4Q96A65 974 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 ATP6V0A2Q9Y487 856 aa25.29■■□□□ 1.64
VPS53-211ENST00000571805 ARFGEF1Q9Y6D6 1849 aa25.28■■□□□ 1.64
VPS53-211ENST00000571805 LRRIQ3A6PVS8 624 aaPredicted RBP25.28■■□□□ 1.64
VPS53-211ENST00000571805 N4BP1O75113 896 aaKnown RBP25.28■■□□□ 1.64
VPS53-211ENST00000571805 EIF4A3P38919 411 aaKnown RBP25.28■■□□□ 1.64
VPS53-211ENST00000571805 HYIQ5T013 277 aa25.28■■□□□ 1.64
VPS53-211ENST00000571805 PSD3Q9NYI0 1048 aa25.28■■□□□ 1.64
VPS53-211ENST00000571805 TARSL2A2RTX5 802 aaKnown RBP25.27■■□□□ 1.64
VPS53-211ENST00000571805 ONECUT3O60422 494 aaPredicted RBP25.27■■□□□ 1.64
VPS53-211ENST00000571805 KIF11P52732 1056 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 COASYQ13057 564 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 SEPT2Q15019 361 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 CDC42EP5Q6NZY7 148 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 KCTD1Q719H9 257 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 MYOCDQ8IZQ8 938 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 PROM2Q8N271 834 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 TXLNBQ8N3L3 684 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 IFIH1Q9BYX4 1025 aaKnown RBP25.27■■□□□ 1.64
VPS53-211ENST00000571805 PSTPIP2Q9H939 334 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 ADAMTSL1Q8N6G6 1762 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 LRRC53A6NM62 1247 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 GCFC2P16383 781 aaKnown RBP25.27■■□□□ 1.64
VPS53-211ENST00000571805 CCDC96Q2M329 555 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 SMCR8Q8TEV9 937 aaPredicted RBP25.27■■□□□ 1.64
VPS53-211ENST00000571805 TSG101Q99816 390 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 SH2D4AQ9H788 454 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 PCDHA12Q9UN75 941 aa25.27■■□□□ 1.64
VPS53-211ENST00000571805 RRAGAQ7L523 313 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 USO1O60763 962 aaKnown RBP25.26■■□□□ 1.63
VPS53-211ENST00000571805 SCNN1DP51172 638 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 KCNMA1Q12791 1236 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 TRIM58Q8NG06 486 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 RNF216Q9NWF9 866 aaPredicted RBP25.26■■□□□ 1.63
VPS53-211ENST00000571805 JRKLQ9Y4A0 524 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 CAPN6Q9Y6Q1 641 aa25.26■■□□□ 1.63
VPS53-211ENST00000571805 SLURP2P0DP57 97 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 HNRNPH2P55795 449 aaKnown RBP25.25■■□□□ 1.63
VPS53-211ENST00000571805 EDEM3Q9BZQ6 932 aa25.25■■□□□ 1.63
VPS53-211ENST00000571805 ZC3H12CQ9C0D7 883 aaKnown RBP25.25■■□□□ 1.63
VPS53-211ENST00000571805 JADE2Q9NQC1 790 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms