RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 DEFB123Q8N688 67 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 CTCFLQ8NI51 663 aaPredicted RBP9.06□□□□□ -0.96
CDH3-209ENST00000569080 AFG1LQ8WV93 481 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 VTI1AQ96AJ9 217 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 CCDC136Q96JN2 1154 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 TCEANC2Q96MN5 208 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 CTAGE1Q96RT6 745 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.06□□□□□ -0.96
CDH3-209ENST00000569080 MTG1Q9BT17 334 aaPredicted RBP9.06□□□□□ -0.96
CDH3-209ENST00000569080 SEZ6LQ9BYH1 1024 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 PPP1R12CQ9BZL4 782 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 HIPK3Q9H422 1215 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 TRMT13Q9NUP7 481 aaKnown RBP9.06□□□□□ -0.96
CDH3-209ENST00000569080 MTMR10Q9NXD2 777 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 DOCK5Q9H7D0 1870 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 VCANP13611 3396 aa9.06□□□□□ -0.96
CDH3-209ENST00000569080 MYH7BA7E2Y1 1941 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 TRANK1O15050 2925 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 GBF1Q92538 1859 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 NID2Q14112 1375 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 CCDC69A6NI79 296 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 GCOM1H8Y6P7 765 aaPredicted RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 PIK3CDO00329 1044 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 MEIS2O14770 477 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 TLR3O15455 904 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 F2P00734 622 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 GH1P01241 217 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 MYL3P08590 195 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 POLR2MP0CAP2 368 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 UBA1P22314 1058 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 CYP2C18P33260 490 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 MRPS9P82933 396 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 SMAD3P84022 425 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 TRAF1Q13077 416 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 SEMA3FQ13275 785 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 NBPF20Q3BBV1 942 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 TMEM240Q5SV17 173 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 NFRKBQ6P4R8 1299 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 MICU3Q86XE3 530 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 CMTR1Q8N1G2 835 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 TMTC2Q8N394 836 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 PPP1R13LQ8WUF5 828 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 PIBF1Q8WXW3 757 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 KAT2BQ92831 832 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 GPKOWQ92917 476 aaPredicted RBP eCLIP9.05□□□□□ -0.96
CDH3-209ENST00000569080 RNPC3Q96LT9 517 aaKnown RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 GUCD1Q96NT3 240 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 INPP4AQ96PE3 977 aaPredicted RBP9.05□□□□□ -0.96
CDH3-209ENST00000569080 NEK1Q96PY6 1258 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 LZTS2Q9BRK4 669 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 BRPF3Q9ULD4 1205 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 MRVI1Q9Y6F6 885 aa9.05□□□□□ -0.96
CDH3-209ENST00000569080 HAS3O00219 553 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 KPNA6O60684 536 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 CALM1P0DP23 149 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 CALM2P0DP24 149 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 CALM3P0DP25 149 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 CYP2C9P11712 490 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 HSPA4P34932 840 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 GNAQP50148 359 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 SP2Q02086 613 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 PPIGQ13427 754 aaKnown RBP eCLIP9.04□□□□□ -0.96
CDH3-209ENST00000569080 RNF20Q5VTR2 975 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 TYW1BQ6NUM6 668 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 USP17L6PQ6QN14 398 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 NFXL1Q6ZNB6 911 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 DHX32Q7L7V1 743 aaKnown RBP9.04□□□□□ -0.96
CDH3-209ENST00000569080 SESTD1Q86VW0 696 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 FANCBQ8NB91 859 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 PPTC7Q8NI37 304 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 RRP36Q96EU6 259 aaKnown RBP9.04□□□□□ -0.96
CDH3-209ENST00000569080 TTYH1Q9H313 450 aaPredicted RBP9.04□□□□□ -0.96
CDH3-209ENST00000569080 FAM217BQ9NTX9 383 aaPredicted RBP9.04□□□□□ -0.96
CDH3-209ENST00000569080 SLC12A7Q9Y666 1083 aa9.04□□□□□ -0.96
CDH3-209ENST00000569080 PTPRSQ13332 1948 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 SPTBN5Q9NRC6 3674 aaKnown RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 hCG_1642624A0A1W2PR95 340 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 ZNF286BP0CG31 522 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 MYCLP12524 364 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 CCND2P30279 289 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 ICAM3P32942 547 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 PTPN11Q06124 597 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 HSDL1Q3SXM5 330 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 BRDTQ58F21 947 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 CELF3Q5SZQ8 465 aaKnown RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 MYSM1Q5VVJ2 828 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 PSRC1Q6PGN9 363 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 FCHSD1Q86WN1 690 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 TMEM199Q8N511 208 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 TET1Q8NFU7 2136 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 DHX38Q92620 1227 aaKnown RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 ZFP91Q96JP5 570 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 BCAS3Q9H6U6 928 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 IL23AQ9NPF7 189 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 CXXC1Q9P0U4 656 aaPredicted RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 SEC63Q9UGP8 760 aaKnown RBP9.03□□□□□ -0.96
CDH3-209ENST00000569080 STXBP5LQ9Y2K9 1186 aa9.03□□□□□ -0.96
CDH3-209ENST00000569080 SPATA31C2B4DYI2 1134 aa9.02□□□□□ -0.97
CDH3-209ENST00000569080 PITPNM1O00562 1244 aa9.02□□□□□ -0.97
CDH3-209ENST00000569080 STAM2O75886 525 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms