RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 UBE2SQ16763 222 aa16■□□□□ 0.15
VPS35-210ENST00000568784 CREG2Q8IUH2 290 aa16■□□□□ 0.15
VPS35-210ENST00000568784 SRP68Q9UHB9 627 aaKnown RBP16■□□□□ 0.15
VPS35-210ENST00000568784 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16■□□□□ 0.15
VPS35-210ENST00000568784 MYMKA6NI61 221 aa16■□□□□ 0.15
VPS35-210ENST00000568784 CYTH3O43739 400 aa16■□□□□ 0.15
VPS35-210ENST00000568784 SEC24CP53992 1094 aa16■□□□□ 0.15
VPS35-210ENST00000568784 TEX11Q8IYF3 940 aa16■□□□□ 0.15
VPS35-210ENST00000568784 ZIM3Q96PE6 472 aa16■□□□□ 0.15
VPS35-210ENST00000568784 AP1M1Q9BXS5 423 aa16■□□□□ 0.15
VPS35-210ENST00000568784 EFCC1Q9HA90 598 aa16■□□□□ 0.15
VPS35-210ENST00000568784 IL17RBQ9NRM6 502 aa16■□□□□ 0.15
VPS35-210ENST00000568784 SIPA1L3O60292 1781 aaPredicted RBP16■□□□□ 0.15
VPS35-210ENST00000568784 KCNQ2O43526 872 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 ORC4O43929 436 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 PAK2Q13177 524 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 DDX12PQ92771 950 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 MTMR8Q96EF0 704 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 KCPQ6ZWJ8 1503 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 TRMT1LQ7Z2T5 733 aaKnown RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 KIAA0895Q8NCT3 520 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 CCSER1Q9C0I3 900 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 CCDC113Q9H0I3 377 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 BARHL2Q9NY43 387 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 COL5A2P05997 1499 aaPredicted RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 MYH10P35580 1976 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 AGPSO00116 658 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 PRPF6O94906 941 aaKnown RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 RDXP35241 583 aaKnown RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 IFFO1Q0D2I5 559 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 IFT88Q13099 833 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 INTS5Q6P9B9 1019 aaKnown RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 OR2W6PQ8NHA6 318 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 LRRC15Q8TF66 581 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 BSDC1Q9NW68 430 aaPredicted RBP15.99■□□□□ 0.15
VPS35-210ENST00000568784 KIF1AQ12756 1690 aa15.99■□□□□ 0.15
VPS35-210ENST00000568784 TLDC2A0PJX2 215 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 FAM153BP0C7A2 387 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 FAM153CQ494X1 144 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 C4orf32Q8N8J7 132 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 FAM153AQ9UHL3 310 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 SPEF2Q9C093 1822 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 C4AP0C0L4 1744 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 C4BP0C0L5 1744 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 GOLGA6L7A0A1B0GV03 622 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 SLC20A2Q08357 652 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 SLC51AQ86UW1 340 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 MYOCDQ8IZQ8 938 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.98■□□□□ 0.15
VPS35-210ENST00000568784 ZNF804BA4D1E1 1349 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 STXBP3O00186 592 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 PCP11498 1178 aaKnown RBP15.98■□□□□ 0.15
VPS35-210ENST00000568784 CDR1P51861 262 aa15.98■□□□□ 0.15
VPS35-210ENST00000568784 GLI1P08151 1106 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 TRADDQ15628 312 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 DGKHQ86XP1 1220 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 DDX42Q86XP3 938 aaKnown RBP eCLIP15.97■□□□□ 0.15
VPS35-210ENST00000568784 DPH5Q9H2P9 285 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 MAD2L2Q9UI95 211 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 PLAGL2Q9UPG8 496 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 SLC16A2P36021 539 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 AARSP49588 968 aaKnown RBP eCLIP15.97■□□□□ 0.15
VPS35-210ENST00000568784 MEA1Q16626 185 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 SALL4Q9UJQ4 1053 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 EIF3HO15372 352 aaKnown RBP eCLIP15.97■□□□□ 0.15
VPS35-210ENST00000568784 MIIPQ5JXC2 388 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 HAUS3Q68CZ6 603 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 CEP57Q86XR8 500 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 USP17L5A8MUK1 530 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 FECHP22830 423 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 FAM26FQ5R3K3 315 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 TMED8Q6PL24 325 aaPredicted RBP15.97■□□□□ 0.15
VPS35-210ENST00000568784 ZNF287Q9HBT7 754 aa15.97■□□□□ 0.15
VPS35-210ENST00000568784 GRM4Q14833 912 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 RPS6KA1Q15418 735 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 ASIC2Q16515 512 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 UHMK1Q8TAS1 419 aaKnown RBP15.96■□□□□ 0.15
VPS35-210ENST00000568784 PACSIN1Q9BY11 444 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 AKAP11Q9UKA4 1901 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 RASSF10A6NK89 507 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 NR1D1P20393 614 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 KLRC1P26715 233 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 TNNC1P63316 161 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 FAM83BQ5T0W9 1011 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 C12orf60Q5U649 245 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 TAX1BP1Q86VP1 789 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 NUDT12Q9BQG2 462 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 PANK4Q9NVE7 773 aa15.96■□□□□ 0.15
VPS35-210ENST00000568784 NPHP3-ACAD11A0A0J9YXS1 232 aa15.96■□□□□ 0.14
VPS35-210ENST00000568784 MYO1FO00160 1098 aa15.96■□□□□ 0.14
VPS35-210ENST00000568784 USP8P40818 1118 aa15.96■□□□□ 0.14
VPS35-210ENST00000568784 EMBQ6PCB8 327 aa15.96■□□□□ 0.14
VPS35-210ENST00000568784 CLSTN1O94985 981 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 ADCY7P51828 1080 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 AENQ8WTP8 325 aaKnown RBP15.95■□□□□ 0.14
VPS35-210ENST00000568784 AK8Q96MA6 479 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 ERGIC2Q96RQ1 377 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 KIAA1024Q9UPX6 916 aa15.95■□□□□ 0.14
VPS35-210ENST00000568784 CTNNA1P35221 906 aaKnown RBP15.95■□□□□ 0.14
VPS35-210ENST00000568784 TBC1D9BQ66K14 1250 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms