RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 THBDP07204 575 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 GLDCP23378 1020 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 GTF2F1P35269 517 aaKnown RBP eCLIP3.95□□□□□ -1.78
VPS35-208ENST00000568612 KCNA10Q16322 511 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 DDR2Q16832 855 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 SPTY2D1Q68D10 685 aaPredicted RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 ZC3H14Q6PJT7 736 aaKnown RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 RPTNQ6XPR3 784 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 ZNF227Q86WZ6 799 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 CKAP2LQ8IYA6 745 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 LRRC56Q8IYG6 542 aaPredicted RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 LZTR1Q8N653 840 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 ZSCAN18Q8TBC5 510 aaPredicted RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 CHMP4CQ96CF2 233 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 FAM210AQ96ND0 272 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 GMLQ99445 158 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 TNFRSF12AQ9NP84 129 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 STK26Q9P289 416 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 KLHL14Q9P2G3 628 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 CNOT6Q9ULM6 557 aaKnown RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 BAZ1BQ9UIG0 1483 aaKnown RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 ZC3H12DA2A288 527 aaKnown RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 FUCA1P04066 466 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 KRT1P04264 644 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 CYBBP04839 570 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 DBHP09172 617 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 EPHB3P54753 998 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 NCKAP1LP55160 1127 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 CORO7P57737 925 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 JAG1P78504 1218 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 ZNF200P98182 395 aaPredicted RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 FZD5Q13467 585 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 NR1I3Q14994 352 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 PRSS53Q2L4Q9 553 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 SLC10A6Q3KNW5 377 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 PLEKHN1Q494U1 663 aaPredicted RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 CIAPIN1Q6FI81 312 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 CTR9Q6PD62 1173 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 PAQR3Q6TCH7 311 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 SDR16C5Q8N3Y7 309 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 MSL3Q8N5Y2 521 aaKnown RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 CHAMP1Q96JM3 812 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 MRGPRX3Q96LB0 322 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 IRF2BPLQ9H1B7 796 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 NKX2-4Q9H2Z4 354 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 CNTD2Q9H8S5 307 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 CYP26B1Q9NR63 512 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 MARCH2Q9P0N8 246 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 MBD1Q9UIS9 605 aaPredicted RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 ISY1Q9ULR0 285 aaKnown RBP3.94□□□□□ -1.78
VPS35-208ENST00000568612 RIPOR2Q9Y4F9 1068 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 IRAK3Q9Y616 596 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 RAD50Q92878 1312 aa3.94□□□□□ -1.78
VPS35-208ENST00000568612 SMARCA2P51531 1590 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 C7orf72A4D263 438 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 HRKO00198 91 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 RFXAPO00287 272 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 MEFVO15553 781 aaPredicted RBP3.93□□□□□ -1.78
VPS35-208ENST00000568612 MYO1BO43795 1136 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 MED14OSP0DP75 135 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 PI3P19957 117 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 CALRP27797 417 aaKnown RBP3.93□□□□□ -1.78
VPS35-208ENST00000568612 CFPP27918 469 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 HOXC12P31275 282 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 CDR1P51861 262 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 LINC00310P59036 64 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 YBX1P67809 324 aaKnown RBP3.93□□□□□ -1.78
VPS35-208ENST00000568612 RAB33AQ14088 237 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 SF1Q15637 639 aaKnown RBP3.93□□□□□ -1.78
VPS35-208ENST00000568612 EP400NLQ6ZTU2 488 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 PPIL6Q8IXY8 311 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 MZB1Q8WU39 189 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 DIO2Q92813 273 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 COPS5Q92905 334 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 TIGD1Q96MW7 591 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 EPN3Q9H201 632 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 CD320Q9NPF0 282 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 SMC4Q9NTJ3 1288 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 DONSONQ9NYP3 566 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 KIF3AQ9Y496 699 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 KCTD3Q9Y597 815 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 HCFC2Q9Y5Z7 792 aa3.93□□□□□ -1.78
VPS35-208ENST00000568612 UQCRHLA0A096LP55 91 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 KLHL33A6NCF5 533 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GOLGA6CA6NDK9 693 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GOLGA6BA6NDN3 693 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 IPO8O15397 1037 aaKnown RBP3.92□□□□□ -1.78
VPS35-208ENST00000568612 KLF4O43474 513 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 CPP00450 1065 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 UQCRHP07919 91 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GOLGA6DP0CG33 693 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 CAPN2P17655 700 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 SCP2P22307 547 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 KCNJ4P48050 445 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 MAPKAPK2P49137 400 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 PPP2R2AP63151 447 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 PRR5P85299 388 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 GABPB1Q06547 395 aaPredicted RBP3.92□□□□□ -1.78
VPS35-208ENST00000568612 SSPNQ14714 243 aa3.92□□□□□ -1.78
VPS35-208ENST00000568612 INF2Q27J81 1249 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms