RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	NKRF	O15226	690 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	MYCL	P12524	364 aa	Predicted RBP	13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	FDPS	P14324	419 aa	Known RBP	13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	SREBF1	P36956	1147 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	GJA8	P48165	433 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	TTLL4	Q14679	1199 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	CCDC144B	Q3MJ40	725 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	PRAMEF19	Q5SWL8	479 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	EEPD1	Q7L9B9	569 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	VSIG10L	Q86VR7	867 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	TRPV1	Q8NER1	839 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	C8orf76	Q96K31	380 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	AIFM3	Q96NN9	605 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	PHF20	Q9BVI0	1012 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	SPC25	Q9HBM1	224 aa		13.91	□□□□□ -0.18
SF3B3-208	ENST00000567250	SGPL1	O95470	568 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	KRT2	P35908	639 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	SAFB	Q15424	915 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	JAKMIP3	Q5VZ66	844 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	IQSEC1	Q6DN90	963 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	KRT25	Q7Z3Z0	450 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	NLRX1	Q86UT6	975 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	CDHR1	Q96JP9	859 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	SMC3	Q9UQE7	1217 aa		13.9	□□□□□ -0.18
SF3B3-208	ENST00000567250	KIAA0100	Q14667	2235 aa	Known RBP	13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	CCDC194	A0A1B0GVG4	234 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	DUSP11	O75319	330 aa	Known RBP	13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	MMP1	P03956	469 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	ADCYAP1R1	P41586	468 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	TNFAIP2	Q03169	654 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	CUL4A	Q13619	759 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	TAPT1	Q6NXT6	567 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	ANKLE1	Q8NAG6	615 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	IL31RA	Q8NI17	732 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	WDR11	Q9BZH6	1224 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	CRISPLD2	Q9H0B8	497 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	XPNPEP3	Q9NQH7	507 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	TMEM260	Q9NX78	707 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	OGDHL	Q9ULD0	1010 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	KCNJ14	Q9UNX9	436 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	MRVI1	Q9Y6F6	885 aa		13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	DDX49	Q9Y6V7	483 aa	Known RBP	13.89	□□□□□ -0.19
SF3B3-208	ENST00000567250	RBM47	A0AV96	593 aa	Known RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	FIBP	O43427	364 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	TFRC	P02786	760 aa	Known RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	HSP90AA1	P07900	732 aa	Known RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	GJB2	P29033	226 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	SOX10	P56693	466 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	ARHGAP4	P98171	946 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	SET	Q01105	290 aa	Predicted RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	NONO	Q15233	471 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	DUSP28	Q4G0W2	176 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	BRDT	Q58F21	947 aa	Predicted RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	KRT40	Q6A162	431 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	SEPT14	Q6ZU15	432 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	RNF180	Q86T96	592 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	TLK2	Q86UE8	772 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	ARRDC4	Q8NCT1	418 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	RASGRP4	Q8TDF6	673 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	GPRASP2	Q96D09	838 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	SHISA4	Q96DD7	197 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	INTS4	Q96HW7	963 aa	Known RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	PGBD1	Q96JS3	809 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	INPP4A	Q96PE3	977 aa	Predicted RBP	13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250		Q9Y3F1	56 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	SYNRG	Q9UMZ2	1314 aa		13.88	□□□□□ -0.19
SF3B3-208	ENST00000567250	BRCA2	P51587	3418 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	DOCK5	Q9H7D0	1870 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	KBTBD13	C9JR72	458 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	MAFG	O15525	162 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	TXN	P10599	105 aa	Known RBP	13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	TGFB3	P10600	412 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	ZNF76	P36508	570 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	FOSB	P53539	338 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	MRPS9	P82933	396 aa	Known RBP	13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	MTMR1	Q13613	665 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	GNL2	Q13823	731 aa	Known RBP	13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	ANO1	Q5XXA6	986 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	LHX8	Q68G74	356 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	DIS3L2	Q8IYB7	885 aa	Known RBP	13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	NAP1L4	Q99733	375 aa	Known RBP	13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	AP5M1	Q9H0R1	490 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	PDGFC	Q9NRA1	345 aa		13.87	□□□□□ -0.19
SF3B3-208	ENST00000567250	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	POTEF	A5A3E0	1075 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250		M0R2N6	131 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	DNM1L	O00429	736 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	DTNB	O60941	627 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	GH1	P01241	217 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	CYP3A4	P08684	503 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	C6orf222	P0C671	652 aa	Predicted RBP	13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	SMPD1	P17405	629 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	PDC	P20941	246 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	ICAM3	P32942	547 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	CPT1A	P50416	773 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	GJA9	P57773	515 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	NPY5R	Q15761	445 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	NIPA1	Q7RTP0	329 aa		13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	PCSK9	Q8NBP7	692 aa	Known RBP	13.86	□□□□□ -0.19
SF3B3-208	ENST00000567250	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms