RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 IPO7O95373 1038 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 FCER1AP12319 257 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 EEF2P13639 858 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 TRIM21P19474 475 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 SLC1A4P43007 532 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 EIF6P56537 245 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 CHMP4BP1P59074 171 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ICA1Q05084 483 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 NFIAQ12857 509 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 MCM6Q14566 821 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 CDC37Q16543 378 aaPredicted RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 UBE2SQ16763 222 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 QRICH1Q2TAL8 776 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 KIF4BQ2VIQ3 1234 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 Q4G0T1 1027 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 VWA3BQ502W6 1294 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ZCWPW2Q504Y3 356 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 MIIPQ5JXC2 388 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ZNF772Q68DY9 489 aaPredicted RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 TTBK2Q6IQ55 1244 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 BTNL9Q6UXG8 535 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 PPP4R3CPQ6ZMV5 832 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 CCDC84Q86UT8 332 aaPredicted RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 ZC3H3Q8IXZ2 948 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 MYOCDQ8IZQ8 938 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 SLC35F6Q8N357 371 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 MSL3Q8N5Y2 521 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 MSANTD4Q8NCY6 345 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ACRBPQ8NEB7 543 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ERMNQ8TAM6 284 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 DDX12PQ92771 950 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 HAS1Q92839 578 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 RPGRIP1Q96KN7 1286 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 AMNQ9BXJ7 453 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 GBP3Q9H0R5 595 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 NUCKS1Q9H1E3 243 aaKnown RBP6.96□□□□□ -1.3
CLN3-223ENST00000566472 SEMA6BQ9H3T3 888 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 LZTFL1Q9NQ48 299 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 FAM198AQ9UFP1 575 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 BRWD3Q6RI45 1802 aa6.96□□□□□ -1.3
CLN3-223ENST00000566472 ZNF646O15015 1829 aaPredicted RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 SIPA1L1O43166 1804 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 FRMD3A2A2Y4 597 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CTAGE15A4D2H0 777 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 POTEMA6NI47 508 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 RNF225M0QZC1 329 aaPredicted RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 KRT86O43790 486 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 MARCH6O60337 910 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 COBLO75128 1261 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CTAGE8P0CG41 777 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CIITAP33076 1130 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 SREBF1P36956 1147 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 VAV2P52735 878 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 MARSP56192 900 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 HERVK_113P62684 666 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 FKBP3Q00688 224 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 AMPD2Q01433 879 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CKAP4Q07065 602 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 DMTNQ08495 405 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 COASYQ13057 564 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 ABCB5Q2M3G0 1257 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 EDRF1Q3B7T1 1238 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 FAM26FQ5R3K3 315 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 TEX35Q5T0J7 233 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 SYDE2Q5VT97 1194 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 WDR59Q6PJI9 974 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 LRRC55Q6ZSA7 311 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 KCTD1Q719H9 257 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CTAGE6Q86UF2 777 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CLEC10AQ8IUN9 316 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 CTAGE4Q8IX94 777 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 HNRNPLLQ8WVV9 542 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 CRYGNQ8WXF5 182 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 ZNF622Q969S3 477 aaKnown RBP eCLIP6.95□□□□□ -1.3
CLN3-223ENST00000566472 JAKMIP2Q96AA8 810 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 DNAJC19Q96DA6 116 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 FAM20AQ96MK3 541 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 PURBQ96QR8 312 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 SLF1Q9BQI6 1058 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 MXD3Q9BW11 206 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 NDST4Q9H3R1 872 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 SLC39A2Q9NP94 309 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 ZNF446Q9NWS9 450 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 HERC5Q9UII4 1024 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 RAB21Q9UL25 225 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 PCDHA12Q9UN75 941 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 SIK3Q9Y2K2 1263 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 REXO2Q9Y3B8 237 aaKnown RBP6.95□□□□□ -1.3
CLN3-223ENST00000566472 PCDHA1Q9Y5I3 950 aa6.95□□□□□ -1.3
CLN3-223ENST00000566472 SSU72P8A0A1W2PR75 194 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 DDTLA6NHG4 134 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 RASSF10A6NK89 507 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 SPDYE4A6NLX3 237 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 PIK3CDO00329 1044 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 PES1O00541 588 aaKnown RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 USO1O60763 962 aaKnown RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 ERLIN1O75477 346 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 LCA5LO95447 670 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 APBA3O96018 575 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 CYP3A4P08684 503 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms