RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 ZFP91Q96JP5 570 aaPredicted RBP21.25■□□□□ 0.99
CLN3-221ENST00000566057 DOCK5Q9H7D0 1870 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 TIMP1P01033 207 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 ARHGAP1Q07960 439 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 TMTC3Q6ZXV5 915 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 TRPV6Q9H1D0 765 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 SEC63Q9UGP8 760 aaKnown RBP21.24■□□□□ 0.99
CLN3-221ENST00000566057 DDX41Q9UJV9 622 aaKnown RBP21.24■□□□□ 0.99
CLN3-221ENST00000566057 SNX14Q9Y5W7 946 aa21.24■□□□□ 0.99
CLN3-221ENST00000566057 TLR3O15455 904 aaKnown RBP21.23■□□□□ 0.99
CLN3-221ENST00000566057 PPP1R13LQ8WUF5 828 aa21.23■□□□□ 0.99
CLN3-221ENST00000566057 AFG1LQ8WV93 481 aa21.23■□□□□ 0.99
CLN3-221ENST00000566057 MTG1Q9BT17 334 aaPredicted RBP21.23■□□□□ 0.99
CLN3-221ENST00000566057 B4GALT4O60513 344 aa21.22■□□□□ 0.99
CLN3-221ENST00000566057 GH1P01241 217 aa21.22■□□□□ 0.99
CLN3-221ENST00000566057 BRDTQ58F21 947 aaPredicted RBP21.22■□□□□ 0.99
CLN3-221ENST00000566057 USP17L6PQ6QN14 398 aa21.22■□□□□ 0.99
CLN3-221ENST00000566057 SYNE3Q6ZMZ3 975 aa21.22■□□□□ 0.99
CLN3-221ENST00000566057 MEIS2O14770 477 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 HMGB1P09429 215 aaKnown RBP21.21■□□□□ 0.99
CLN3-221ENST00000566057 FPGSQ05932 587 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 NBPF20Q3BBV1 942 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 MFSD5Q6N075 450 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 JAKMIP1Q96N16 626 aaKnown RBP21.21■□□□□ 0.99
CLN3-221ENST00000566057 SEZ6LQ9BYH1 1024 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 PPP1R12CQ9BZL4 782 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 MRVI1Q9Y6F6 885 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 FRMPD4Q14CM0 1322 aa21.21■□□□□ 0.99
CLN3-221ENST00000566057 TRIP12Q14669 1992 aaPredicted RBP21.21■□□□□ 0.99
CLN3-221ENST00000566057 ZBTB43O43298 467 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 KPNA6O60684 536 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 REC8O95072 547 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 MMP3P08254 477 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 CCND2P30279 289 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 CYP2C18P33260 490 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 MRPS9P82933 396 aaKnown RBP21.2■□□□□ 0.98
CLN3-221ENST00000566057 SP2Q02086 613 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 FUT2Q10981 343 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 ERICH6BQ5W0A0 696 aa21.2■□□□□ 0.98
CLN3-221ENST00000566057 GPKOWQ92917 476 aaPredicted RBP eCLIP21.2■□□□□ 0.98
CLN3-221ENST00000566057 ALDH8A1Q9H2A2 487 aaPredicted RBP21.2■□□□□ 0.98
CLN3-221ENST00000566057 FAM217BQ9NTX9 383 aaPredicted RBP21.2■□□□□ 0.98
CLN3-221ENST00000566057 KLF18A0A0U1RQI7 1052 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 PIK3CDO00329 1044 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 Q6ZUG5 572 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 C16orf59Q7L2K0 433 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 SMARCC2Q8TAQ2 1214 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 EMID1Q96A84 441 aaPredicted RBP21.19■□□□□ 0.98
CLN3-221ENST00000566057 TRMT13Q9NUP7 481 aaKnown RBP21.19■□□□□ 0.98
CLN3-221ENST00000566057 RBM28Q9NW13 759 aaKnown RBP21.19■□□□□ 0.98
CLN3-221ENST00000566057 UMODL1Q5DID0 1318 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 CNTNAP5Q8WYK1 1306 aa21.19■□□□□ 0.98
CLN3-221ENST00000566057 SORBS3O60504 671 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 CSF2RAP15509 400 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 CDC27P30260 824 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 APOBRQ0VD83 1088 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 RTN1Q16799 776 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 GPR153Q6NV75 609 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 DHX37Q8IY37 1157 aaKnown RBP21.18■□□□□ 0.98
CLN3-221ENST00000566057 BCAS3Q9H6U6 928 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 PSTPIP2Q9H939 334 aa21.18■□□□□ 0.98
CLN3-221ENST00000566057 SCN5AQ14524 2016 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 LAMC2Q13753 1193 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 MYSM1Q5VVJ2 828 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 KCNV1Q6PIU1 500 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 BLOC1S2Q6QNY1 142 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 Q7L0L9 218 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 KAT2BQ92831 832 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 CUL5Q93034 780 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 NOC4LQ9BVI4 516 aaKnown RBP21.17■□□□□ 0.98
CLN3-221ENST00000566057 HIPK3Q9H422 1215 aa21.17■□□□□ 0.98
CLN3-221ENST00000566057 V9GY48 417 aaPredicted RBP21.17■□□□□ 0.98
CLN3-221ENST00000566057 GOLGA8AA7E2F4 631 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 GOLGA8BA8MQT2 603 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 TGFB3P10600 412 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 CYP2C9P11712 490 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 CASTP20810 708 aaKnown RBP21.16■□□□□ 0.98
CLN3-221ENST00000566057 UBA1P22314 1058 aaKnown RBP21.16■□□□□ 0.98
CLN3-221ENST00000566057 RPS6KB1P23443 525 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 CHMP4BP1P59074 171 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 FGD1P98174 961 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 UBE2SQ16763 222 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 FAM47CQ5HY64 1035 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 CELF3Q5SZQ8 465 aaKnown RBP21.16■□□□□ 0.98
CLN3-221ENST00000566057 WWC2Q6AWC2 1192 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 NFRKBQ6P4R8 1299 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 HEATR3Q7Z4Q2 680 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 TMEM199Q8N511 208 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 PPTC7Q8NI37 304 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 BRF1Q92994 677 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 USP26Q9BXU7 913 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 RTEL1Q9NZ71 1219 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 NAP1L2Q9ULW6 460 aaPredicted RBP21.16■□□□□ 0.98
CLN3-221ENST00000566057 COL6A3P12111 3177 aa21.16■□□□□ 0.98
CLN3-221ENST00000566057 GGPS1O95749 300 aa21.15■□□□□ 0.98
CLN3-221ENST00000566057 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
CLN3-221ENST00000566057 ADD1P35611 737 aaKnown RBP21.15■□□□□ 0.98
CLN3-221ENST00000566057 SEMA3FQ13275 785 aa21.15■□□□□ 0.98
CLN3-221ENST00000566057 PPIGQ13427 754 aaKnown RBP eCLIP21.15■□□□□ 0.986e-7■■□□□ 11.8
CLN3-221ENST00000566057 DGKDQ16760 1214 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms