RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SESTD1Q86VW0 696 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 NCOA7Q8NI08 942 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 VWCEQ96DN2 955 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 MRVI1Q9Y6F6 885 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 PPP1R11O60927 126 aaPredicted RBP21.74■■□□□ 1.07
CLN3-218ENST00000565688 ATP2A2P16615 1042 aaKnown RBP21.74■■□□□ 1.07
CLN3-218ENST00000565688 CHMP4BP1P59074 171 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 LAMC2Q13753 1193 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 KCNV1Q6PIU1 500 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 STOX1Q6ZVD7 989 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 CHST3Q7LGC8 479 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 DEFB128Q7Z7B8 93 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 CCDC155Q8N6L0 562 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 NKX2-4Q9H2Z4 354 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 PRDM12Q9H4Q4 367 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 RIOX1Q9H6W3 641 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 PCDHA11Q9Y5I1 949 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 KIAA1217Q5T5P2 1943 aa21.74■■□□□ 1.07
CLN3-218ENST00000565688 VCANP13611 3396 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 CHD7Q9P2D1 2997 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 E7EWF7 191 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 SGSM2O43147 1006 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 IQCF3P0C7M6 154 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 WTAPQ15007 396 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 PTGISQ16647 500 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 PDCD2LQ9BRP1 358 aa21.73■■□□□ 1.07
CLN3-218ENST00000565688 YBX2Q9Y2T7 364 aaKnown RBP21.73■■□□□ 1.07
CLN3-218ENST00000565688 HOMER1Q86YM7 354 aa21.72■■□□□ 1.07
CLN3-218ENST00000565688 PPTC7Q8NI37 304 aa21.72■■□□□ 1.07
CLN3-218ENST00000565688 CAGE1Q8TC20 777 aa21.72■■□□□ 1.07
CLN3-218ENST00000565688 PPP1R13LQ8WUF5 828 aa21.72■■□□□ 1.07
CLN3-218ENST00000565688 KATNAL1Q9BW62 490 aa21.72■■□□□ 1.07
CLN3-218ENST00000565688 PNMA6FA0A0J9YX94 578 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 GCOM1H8Y6P7 765 aaPredicted RBP21.71■■□□□ 1.07
CLN3-218ENST00000565688 POLR2MP0CAP2 368 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 TROAPQ12815 778 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 CATIPQ7Z7H3 387 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 VSIG10LQ86VR7 867 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 DHX37Q8IY37 1157 aaKnown RBP21.71■■□□□ 1.07
CLN3-218ENST00000565688 KAT2BQ92831 832 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 MAP4K1Q92918 833 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 PIGSQ96S52 555 aa21.71■■□□□ 1.07
CLN3-218ENST00000565688 TGFB3P10600 412 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 MYCLP12524 364 aaPredicted RBP21.7■■□□□ 1.06
CLN3-218ENST00000565688 HOXA13P31271 388 aaPredicted RBP21.7■■□□□ 1.06
CLN3-218ENST00000565688 RABGGTBP53611 331 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 TMEM67Q5HYA8 995 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 PPP2R2DQ66LE6 453 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 GDF6Q6KF10 455 aaPredicted RBP21.7■■□□□ 1.06
CLN3-218ENST00000565688 C7orf31Q8N865 590 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 USP38Q8NB14 1042 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 PHOSPHO2Q8TCD6 241 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 AFAP1L1Q8TED9 768 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 SYMPKQ92797 1274 aaKnown RBP21.7■■□□□ 1.06
CLN3-218ENST00000565688 SLC9A7Q96T83 725 aa21.7■■□□□ 1.06
CLN3-218ENST00000565688 FTOQ9C0B1 505 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN3-218ENST00000565688 TRANK1O15050 2925 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 PARNO95453 639 aaKnown RBP21.69■■□□□ 1.06
CLN3-218ENST00000565688 F2P00734 622 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 CCND2P30279 289 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 IRX6P78412 446 aaPredicted RBP21.69■■□□□ 1.06
CLN3-218ENST00000565688 PGM5Q15124 567 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 SLC35G1Q2M3R5 365 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 MAP3K14Q99558 947 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 SENP2Q9HC62 589 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 GTF2IRD1Q9UHL9 959 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 TAF6LQ9Y6J9 622 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 GBF1Q92538 1859 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 TANC1Q9C0D5 1861 aa21.69■■□□□ 1.06
CLN3-218ENST00000565688 CYTH3O43739 400 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 PPFIA4O75335 1185 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 RGS20O76081 388 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 BAIAP3O94812 1187 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 HOXD8P13378 290 aaPredicted RBP21.68■■□□□ 1.06
CLN3-218ENST00000565688 PSEN2P49810 448 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 RBL2Q08999 1139 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 CELF3Q5SZQ8 465 aaKnown RBP21.68■■□□□ 1.06
CLN3-218ENST00000565688 MYSM1Q5VVJ2 828 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 IGDCC4Q8TDY8 1250 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 MTA3Q9BTC8 594 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 TTC28Q96AY4 2481 aa21.68■■□□□ 1.06
CLN3-218ENST00000565688 MYO9BQ13459 2157 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 SCN5AQ14524 2016 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 SELPP16109 830 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 IGFBP4P22692 258 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 ADGRE1Q14246 886 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 MFSD10Q14728 455 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 MB21D2Q8IYB1 491 aaPredicted RBP21.67■■□□□ 1.06
CLN3-218ENST00000565688 SPATA33Q96N06 139 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 CTAGE1Q96RT6 745 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 HDAC6Q9UBN7 1215 aa21.67■■□□□ 1.06
CLN3-218ENST00000565688 RBM8AQ9Y5S9 174 aaKnown RBP21.67■■□□□ 1.06
CLN3-218ENST00000565688 HAS3O00219 553 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 GGPS1O95749 300 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 MYOGP15173 224 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 KIF5BP33176 963 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 ANTXR2P58335 489 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 KIAA0753Q2KHM9 967 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 LRRC8DQ7L1W4 858 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 FCHSD1Q86WN1 690 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms