RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PPP1R12CQ9BZL4 782 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 WNT8AQ9H1J5 351 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 TRMT13Q9NUP7 481 aaKnown RBP17.23■□□□□ 0.35
CLN3-213ENST00000565047 GCOM1H8Y6P7 765 aaPredicted RBP17.22■□□□□ 0.35
CLN3-213ENST00000565047 CDC45O75419 566 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 GH1P01241 217 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 POLR2MP0CAP2 368 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 HOXD8P13378 290 aaPredicted RBP17.22■□□□□ 0.35
CLN3-213ENST00000565047 RXRAP19793 462 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 SP2Q02086 613 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 PPIGQ13427 754 aaKnown RBP eCLIP17.22■□□□□ 0.356e-7■■□□□ 11.8
CLN3-213ENST00000565047 NFRKBQ6P4R8 1299 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 CMTR1Q8N1G2 835 aaKnown RBP17.22■□□□□ 0.35
CLN3-213ENST00000565047 TMEM199Q8N511 208 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 CTCFLQ8NI51 663 aaPredicted RBP17.22■□□□□ 0.35
CLN3-213ENST00000565047 RNPC3Q96LT9 517 aaKnown RBP17.22■□□□□ 0.35
CLN3-213ENST00000565047 LZTS2Q9BRK4 669 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 HIPK3Q9H422 1215 aa17.22■□□□□ 0.35
CLN3-213ENST00000565047 EYSQ5T1H1 3165 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 PIK3CDO00329 1044 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 MEIS2O14770 477 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 KIF5BP33176 963 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 MRPS9P82933 396 aaKnown RBP17.21■□□□□ 0.35
CLN3-213ENST00000565047 ZNF365Q70YC5 407 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 SESTD1Q86VW0 696 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 PPP1R13LQ8WUF5 828 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 GPKOWQ92917 476 aaPredicted RBP eCLIP17.21■□□□□ 0.35
CLN3-213ENST00000565047 NEK1Q96PY6 1258 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 TTYH1Q9H313 450 aaPredicted RBP17.21■□□□□ 0.35
CLN3-213ENST00000565047 STXBP5LQ9Y2K9 1186 aa17.21■□□□□ 0.35
CLN3-213ENST00000565047 CCDC69A6NI79 296 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 CALM1P0DP23 149 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 CALM2P0DP24 149 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 CALM3P0DP25 149 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 ACRP10323 421 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 CYP2C9P11712 490 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 GNAQP50148 359 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 PTPN11Q06124 597 aaPredicted RBP17.2■□□□□ 0.34
CLN3-213ENST00000565047 FUT2Q10981 343 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 BRDTQ58F21 947 aaPredicted RBP17.2■□□□□ 0.34
CLN3-213ENST00000565047 MYSM1Q5VVJ2 828 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 FANCBQ8NB91 859 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 PPTC7Q8NI37 304 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 PIBF1Q8WXW3 757 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 ZFP91Q96JP5 570 aaPredicted RBP17.2■□□□□ 0.34
CLN3-213ENST00000565047 SEMA6BQ9H3T3 888 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 IL23AQ9NPF7 189 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 BRPF3Q9ULD4 1205 aa17.2■□□□□ 0.34
CLN3-213ENST00000565047 HAS3O00219 553 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 SUPT20HL2P0C7V6 817 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 TGFB3P10600 412 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 MYCLP12524 364 aaPredicted RBP17.19■□□□□ 0.34
CLN3-213ENST00000565047 CCL23P55773 120 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 SEMA3FQ13275 785 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 LAMC2Q13753 1193 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 CELF3Q5SZQ8 465 aaKnown RBP17.19■□□□□ 0.34
CLN3-213ENST00000565047 RNF20Q5VTR2 975 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 NFXL1Q6ZNB6 911 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 TMTC3Q6ZXV5 915 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 DHX32Q7L7V1 743 aaKnown RBP17.19■□□□□ 0.34
CLN3-213ENST00000565047 FCHSD1Q86WN1 690 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 RAB11FIP4Q86YS3 637 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 HERVK_113Q902F9 699 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 RRP36Q96EU6 259 aaKnown RBP17.19■□□□□ 0.34
CLN3-213ENST00000565047 CCDC136Q96JN2 1154 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 INPP4AQ96PE3 977 aaPredicted RBP17.19■□□□□ 0.34
CLN3-213ENST00000565047 BCAS3Q9H6U6 928 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 SLC12A7Q9Y666 1083 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 MRVI1Q9Y6F6 885 aa17.19■□□□□ 0.34
CLN3-213ENST00000565047 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.18■□□□□ 0.34
CLN3-213ENST00000565047 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.18■□□□□ 0.34
CLN3-213ENST00000565047 UBA1P22314 1058 aaKnown RBP17.18■□□□□ 0.34
CLN3-213ENST00000565047 ICAM3P32942 547 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 HSDL1Q3SXM5 330 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 KCNV1Q6PIU1 500 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 APOA5Q6Q788 366 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 USP17L6PQ6QN14 398 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 TCEANC2Q96MN5 208 aa17.18■□□□□ 0.34
CLN3-213ENST00000565047 FAM217BQ9NTX9 383 aaPredicted RBP17.18■□□□□ 0.34
CLN3-213ENST00000565047 CXXC1Q9P0U4 656 aaPredicted RBP17.18■□□□□ 0.34
CLN3-213ENST00000565047 F2P00734 622 aa17.17■□□□□ 0.34
CLN3-213ENST00000565047 CASTP20810 708 aaKnown RBP17.17■□□□□ 0.34
CLN3-213ENST00000565047 CCND2P30279 289 aa17.17■□□□□ 0.34
CLN3-213ENST00000565047 GPNMBQ14956 572 aa17.17■□□□□ 0.34
CLN3-213ENST00000565047 DGKDQ16760 1214 aa17.17■□□□□ 0.34
CLN3-213ENST00000565047 PSRC1Q6PGN9 363 aaPredicted RBP17.17■□□□□ 0.34
CLN3-213ENST00000565047 SCLYQ96I15 445 aa17.17■□□□□ 0.34
CLN3-213ENST00000565047 TMEM265A0A087WTH1 108 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 hCG_1642624A0A1W2PR95 340 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 SPATA31C2B4DYI2 1134 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 PPFIA4O75335 1185 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 HSPA4P34932 840 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 HIC1Q14526 733 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 ZNF697Q5TEC3 545 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 GDF6Q6KF10 455 aaPredicted RBP17.16■□□□□ 0.34
CLN3-213ENST00000565047 DHX37Q8IY37 1157 aaKnown RBP17.16■□□□□ 0.34
CLN3-213ENST00000565047 DHX38Q92620 1227 aaKnown RBP17.16■□□□□ 0.34
CLN3-213ENST00000565047 FAM161BQ96MY7 647 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 C16orf70Q9BSU1 422 aa17.16■□□□□ 0.34
CLN3-213ENST00000565047 GRXCR1A8MXD5 290 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms