RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GH1P01241 217 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 MMP3P08254 477 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 CYP2C9P11712 490 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 MCM5P33992 734 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 BRDTQ58F21 947 aaPredicted RBP12.55□□□□□ -0.4
VPS39-208ENST00000564994 VSIG10LQ86VR7 867 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 ZFP91Q96JP5 570 aaPredicted RBP12.55□□□□□ -0.4
VPS39-208ENST00000564994 MAP3K14Q99558 947 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 MTA3Q9BTC8 594 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 SEMA6BQ9H3T3 888 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 IL23AQ9NPF7 189 aa12.55□□□□□ -0.4
VPS39-208ENST00000564994 GRXCR1A8MXD5 290 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 GCOM1H8Y6P7 765 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 KPNA6O60684 536 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 DDAH1O94760 285 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 PLEKHA8P1O95397 391 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 POLR2MP0CAP2 368 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 MYCLP12524 364 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 RXRAP19793 462 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 PGM5Q15124 567 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 FAM47CQ5HY64 1035 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 NFRKBQ6P4R8 1299 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 PSRC1Q6PGN9 363 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 CASC1Q6TDU7 716 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 FCHSD1Q86WN1 690 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 CMTR1Q8N1G2 835 aaKnown RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 SAMD3Q8N6K7 520 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 CTCFLQ8NI51 663 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 KAT2BQ92831 832 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 SCLYQ96I15 445 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 TMEM87BQ96K49 555 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 CDX2Q99626 313 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 SPZ1Q9BXG8 430 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 LRRC2Q9BYS8 371 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 CXXC1Q9P0U4 656 aaPredicted RBP12.54□□□□□ -0.4
VPS39-208ENST00000564994 MRVI1Q9Y6F6 885 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 CUL9Q8IWT3 2517 aa12.54□□□□□ -0.4
VPS39-208ENST00000564994 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.53□□□□□ -0.4
VPS39-208ENST00000564994 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.53□□□□□ -0.4
VPS39-208ENST00000564994 SP2Q02086 613 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 TRAF1Q13077 416 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 RAB11FIP4Q86YS3 637 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 SRBD1Q8N5C6 995 aaKnown RBP12.53□□□□□ -0.4
VPS39-208ENST00000564994 HERVK_113Q902F9 699 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 GPKOWQ92917 476 aaPredicted RBP eCLIP12.53□□□□□ -0.4
VPS39-208ENST00000564994 EMID1Q96A84 441 aaPredicted RBP12.53□□□□□ -0.4
VPS39-208ENST00000564994 CTAGE1Q96RT6 745 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 FRMPD4Q14CM0 1322 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 CHD7Q9P2D1 2997 aa12.53□□□□□ -0.4
VPS39-208ENST00000564994 CCDC69A6NI79 296 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 SORBS3O60504 671 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 FGBP02675 491 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 SUPT20HL2P0C7V6 817 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 DNAJB2P25686 324 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 SMARCA1P28370 1054 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 KIF5BP33176 963 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 PBX2P40425 430 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 LIFRP42702 1097 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 CHMP4BP1P59074 171 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 MRPS9P82933 396 aaKnown RBP12.52□□□□□ -0.41
VPS39-208ENST00000564994 PTPN11Q06124 597 aaPredicted RBP12.52□□□□□ -0.41
VPS39-208ENST00000564994 NFXL1Q6ZNB6 911 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 OTOP2Q7RTS6 562 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 RASEFQ8IZ41 740 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 TMTC2Q8N394 836 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 SLC17A8Q8NDX2 589 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 VCANP13611 3396 aa12.52□□□□□ -0.41
VPS39-208ENST00000564994 TMEM265A0A087WTH1 108 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 MEIS2O14770 477 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 CASTP20810 708 aaKnown RBP12.51□□□□□ -0.41
VPS39-208ENST00000564994 UBA1P22314 1058 aaKnown RBP12.51□□□□□ -0.41
VPS39-208ENST00000564994 CCND2P30279 289 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 LAMC2Q13753 1193 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 DGKDQ16760 1214 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 HSDL1Q3SXM5 330 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 MYSM1Q5VVJ2 828 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 GDF6Q6KF10 455 aaPredicted RBP12.51□□□□□ -0.41
VPS39-208ENST00000564994 USP17L6PQ6QN14 398 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 SESTD1Q86VW0 696 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 DHX37Q8IY37 1157 aaKnown RBP12.51□□□□□ -0.41
VPS39-208ENST00000564994 PPTC7Q8NI37 304 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 MYLIPQ8WY64 445 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 RRP36Q96EU6 259 aaKnown RBP12.51□□□□□ -0.41
VPS39-208ENST00000564994 TCEANC2Q96MN5 208 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 LZTS2Q9BRK4 669 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 PBX4Q9BYU1 374 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 BCAS3Q9H6U6 928 aa12.51□□□□□ -0.41
VPS39-208ENST00000564994 PTPRSQ13332 1948 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 hCG_1642624A0A1W2PR95 340 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 RBAK-RBAKDNI3L0D1 243 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 HAS3O00219 553 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 CDC45O75419 566 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 GGPS1O95749 300 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 F2P00734 622 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 IQCF3P0C7M6 154 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 ZNF286BP0CG31 522 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 CALM1P0DP23 149 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 CALM2P0DP24 149 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 CALM3P0DP25 149 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 HOXD8P13378 290 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms