RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 HMGB1P09429 215 aaKnown RBP18.08■□□□□ 0.48
VPS39-203ENST00000561797 PURAQ00577 322 aaKnown RBP18.08■□□□□ 0.48
VPS39-203ENST00000561797 SLC43A3Q8NBI5 491 aa18.08■□□□□ 0.48
VPS39-203ENST00000561797 SMARCC2Q8TAQ2 1214 aa18.08■□□□□ 0.48
VPS39-203ENST00000561797 KCNB2Q92953 911 aa18.08■□□□□ 0.48
VPS39-203ENST00000561797 MRVI1Q9Y6F6 885 aa18.08■□□□□ 0.48
VPS39-203ENST00000561797 TRIP12Q14669 1992 aaPredicted RBP18.08■□□□□ 0.48
VPS39-203ENST00000561797 KLF18A0A0U1RQI7 1052 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 A6NJR5 290 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 TIMP1P01033 207 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 CCND2P30279 289 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 CHMP4BP1P59074 171 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 SHHQ15465 462 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 C9orf50Q5SZB4 431 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 USP17L6PQ6QN14 398 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 VSIG10LQ86VR7 867 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 PPP1R13LQ8WUF5 828 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 AFG1LQ8WV93 481 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 CUL5Q93034 780 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 MTG1Q9BT17 334 aaPredicted RBP18.07■□□□□ 0.48
VPS39-203ENST00000561797 PPP1R12CQ9BZL4 782 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 DDX41Q9UJV9 622 aaKnown RBP18.07■□□□□ 0.48
VPS39-203ENST00000561797 TBX21Q9UL17 535 aa18.07■□□□□ 0.48
VPS39-203ENST00000561797 GOLGA8AA7E2F4 631 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 GOLGA8BA8MQT2 603 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 SORBS3O60504 671 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 CD4P01730 458 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 ARHGAP1Q07960 439 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 RTN1Q16799 776 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 LRIT3Q3SXY7 679 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 BLOC1S2Q6QNY1 142 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 Q6ZUG5 572 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 TRPV6Q9H1D0 765 aa18.06■□□□□ 0.48
VPS39-203ENST00000561797 RBM28Q9NW13 759 aaKnown RBP18.06■□□□□ 0.48
VPS39-203ENST00000561797 SCN5AQ14524 2016 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 KPNA6O60684 536 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 RGS20O76081 388 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 EPHB4P54760 987 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 FPGSQ05932 587 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 APOBRQ0VD83 1088 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 NBPF20Q3BBV1 942 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 FAM47CQ5HY64 1035 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 HEATR3Q7Z4Q2 680 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 DHX37Q8IY37 1157 aaKnown RBP18.05■□□□□ 0.48
VPS39-203ENST00000561797 GPKOWQ92917 476 aaPredicted RBP eCLIP18.05■□□□□ 0.48
VPS39-203ENST00000561797 SEZ6LQ9BYH1 1024 aa18.05■□□□□ 0.48
VPS39-203ENST00000561797 CNTNAP5Q8WYK1 1306 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 MEIS2O14770 477 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 B4GALT4O60513 344 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 MMP3P08254 477 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 CYP2C18P33260 490 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 BRF1Q92994 677 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 ALDH8A1Q9H2A2 487 aaPredicted RBP18.04■□□□□ 0.48
VPS39-203ENST00000561797 PSTPIP2Q9H939 334 aa18.04■□□□□ 0.48
VPS39-203ENST00000561797 CASTP20810 708 aaKnown RBP18.03■□□□□ 0.48
VPS39-203ENST00000561797 RPS6KB1P23443 525 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 CDC27P30260 824 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 MRPS9P82933 396 aaKnown RBP18.03■□□□□ 0.48
VPS39-203ENST00000561797 MFSD5Q6N075 450 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 KCNV1Q6PIU1 500 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 HIPK3Q9H422 1215 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 RTEL1Q9NZ71 1219 aa18.03■□□□□ 0.48
VPS39-203ENST00000561797 V9GY48 417 aaPredicted RBP18.03■□□□□ 0.48
VPS39-203ENST00000561797 RANBP2P49792 3224 aaKnown RBP18.03■□□□□ 0.48
VPS39-203ENST00000561797 FRMPD4Q14CM0 1322 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 PIK3CDO00329 1044 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 PSMA5P28066 241 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 SP2Q02086 613 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 LAMC2Q13753 1193 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 UBE2SQ16763 222 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 TMEM199Q8N511 208 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 KAT6AQ92794 2004 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 USP26Q9BXU7 913 aa18.02■□□□□ 0.48
VPS39-203ENST00000561797 FAM217BQ9NTX9 383 aaPredicted RBP18.02■□□□□ 0.48
VPS39-203ENST00000561797 TRMT13Q9NUP7 481 aaKnown RBP18.02■□□□□ 0.48
VPS39-203ENST00000561797 UMODL1Q5DID0 1318 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 GGPS1O95749 300 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 CSF2RAP15509 400 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 ADD1P35611 737 aaKnown RBP18.01■□□□□ 0.47
VPS39-203ENST00000561797 METAP2P50579 478 aaKnown RBP eCLIP18.01■□□□□ 0.47
VPS39-203ENST00000561797 FUT2Q10981 343 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 PPIGQ13427 754 aaKnown RBP eCLIP18.01■□□□□ 0.47
VPS39-203ENST00000561797 DGKDQ16760 1214 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 GNPTABQ3T906 1256 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 CELF3Q5SZQ8 465 aaKnown RBP18.01■□□□□ 0.47
VPS39-203ENST00000561797 WWC2Q6AWC2 1192 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 GBF1Q92538 1859 aa18.01■□□□□ 0.47
VPS39-203ENST00000561797 SUPT20HL2P0C7V6 817 aa18■□□□□ 0.47
VPS39-203ENST00000561797 ACRP10323 421 aa18■□□□□ 0.47
VPS39-203ENST00000561797 TGFB3P10600 412 aa18■□□□□ 0.47
VPS39-203ENST00000561797 CYP2C9P11712 490 aa18■□□□□ 0.47
VPS39-203ENST00000561797 UBA1P22314 1058 aaKnown RBP18■□□□□ 0.47
VPS39-203ENST00000561797 NAPAP54920 295 aa18■□□□□ 0.47
VPS39-203ENST00000561797 CCL23P55773 120 aa18■□□□□ 0.47
VPS39-203ENST00000561797 MYSM1Q5VVJ2 828 aa18■□□□□ 0.47
VPS39-203ENST00000561797 PCNX4Q63HM2 1172 aa18■□□□□ 0.47
VPS39-203ENST00000561797 NFRKBQ6P4R8 1299 aa18■□□□□ 0.47
VPS39-203ENST00000561797 PPTC7Q8NI37 304 aa18■□□□□ 0.47
VPS39-203ENST00000561797 KAT2BQ92831 832 aa18■□□□□ 0.47
VPS39-203ENST00000561797 EMID1Q96A84 441 aaPredicted RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms