RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 STXBP2Q15833 593 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 STX1AQ16623 288 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 MUM1L1Q5H9M0 696 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 SWSAP1Q6NVH7 229 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 HPS3Q969F9 1004 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PARK7Q99497 189 aaKnown RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 ZFYVE28Q9HCC9 887 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 ANKFY1Q9P2R3 1169 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 AKT3Q9Y243 479 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PALM3A6NDB9 673 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 INO80B-WBP1J3KQ70 363 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PSMA7O14818 248 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 YEATS4O95619 227 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 GGPS1O95749 300 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PLCG1P19174 1290 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 CCND2P30279 289 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 GTF2A2P52657 109 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 TDRD12Q587J7 1177 aaKnown RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 CACNA2D4Q7Z3S7 1137 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 TMC6Q7Z403 805 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM87AQ8NBN3 555 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 TRIM6Q9C030 488 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 INO80BQ9C086 356 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PPP1R9AQ9ULJ8 1098 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PCDHA5Q9Y5H7 936 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 ZNF831Q5JPB2 1677 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 LY75O60449 1722 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CYP2C19P33261 490 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 ATN1P54259 1190 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 BIRC3Q13489 604 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 POSTNQ15063 836 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SYCP1Q15431 976 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 ADALQ6DHV7 355 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 HS2ST1Q7LGA3 356 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SMC1BQ8NDV3 1235 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CCDC127Q96BQ5 260 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SPZ1Q9BXG8 430 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 EHD4Q9H223 541 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 EMILIN3Q9NT22 766 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 FAM217BQ9NTX9 383 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 GABBR1Q9UBS5 961 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CTSHP09668 335 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 LRMPQ12912 555 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 ODR4Q5SWX8 454 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 RGMBQ6NW40 437 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SESTD1Q86VW0 696 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CCDC65Q8IXS2 484 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 DYDC2Q96IM9 177 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 WNK4Q96J92 1243 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SPATA33Q96N06 139 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CRACR2AQ9BSW2 395 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 WDR11Q9BZH6 1224 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SPATC1LQ9H0A9 340 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 VPS33BQ9H267 617 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 PCIF1Q9H4Z3 704 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 RABGAP1Q9Y3P9 1069 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 RIPK3Q9Y572 518 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 TOGARAM1Q9Y4F4 1720 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CLIC2O15247 247 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CTAGE5O15320 804 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 SSR1P43307 286 aaKnown RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 PSMC4P43686 418 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CEP55Q53EZ4 464 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 KANK3Q6NY19 840 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 EP400NLQ6ZTU2 488 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 CDR2LQ86X02 465 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 IL27Q8NEV9 243 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 IFT74Q96LB3 600 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 GMLQ99445 158 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 TRMT1Q9NXH9 659 aaKnown RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 TRIM17Q9Y577 477 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 PDS5AQ29RF7 1337 aaKnown RBP6.07□□□□□ -1.44
VPS13C-209ENST00000560637 KDM3BQ7LBC6 1761 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 C10orf71Q711Q0 1435 aa6.07□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM150BA6NC51 233 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 SMTNL1A8MU46 457 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 K7ENM7 598 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 VWA5AO00534 786 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 SLC37A4O43826 429 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 CSDE1O75534 798 aaKnown RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 CAPN15O75808 1086 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 PLA2G4FQ68DD2 849 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 PKD1L3Q7Z443 1732 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 NPHP3-ACAD11A0A0J9YXS1 232 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 ADCY5O95622 1261 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 KRT19P08727 400 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 ARP10275 920 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 NPEPPSP55786 919 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 UBASH3AP57075 661 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 TBC1D8BQ0IIM8 1120 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 NTRK3Q16288 839 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 TRIM50Q86XT4 487 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 FAM178BQ8IXR5 827 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 DEPTORQ8TB45 409 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 KIAA1683Q9H0B3 1180 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 PRDM5Q9NQX1 630 aaPredicted RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 DISC1Q9NRI5 854 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 FBXO40Q9UH90 709 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms