RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MX2P20592 715 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 DMTNQ08495 405 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 SGO2Q562F6 1265 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 ZMYM1Q5SVZ6 1142 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 ZNF658Q5TYW1 1059 aaPredicted RBP14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 APOA5Q6Q788 366 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 RPAINQ86UA6 219 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 GAS2L3Q86XJ1 694 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 TCP11Q8WWU5 503 aa14.34□□□□□ -0.11
CSPG4P11-201ENST00000560634 SGK1O00141 431 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 PIK3CAP42336 1068 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 SEPT2Q15019 361 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 FAM186BQ8IYM0 893 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 ZNF653Q96CK0 615 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 WDR11Q9BZH6 1224 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 SUGCTQ9HAC7 445 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 SHANK2Q9UPX8 1470 aa14.33□□□□□ -0.11
CSPG4P11-201ENST00000560634 VGLL3A8MV65 326 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 HNRNPDLO14979 420 aaKnown RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PLTPP55058 493 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 CUL4AQ13619 759 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 EXOC8Q8IYI6 725 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 NOC2LQ9Y3T9 749 aaKnown RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 FMNL1O95466 1100 aaPredicted RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 SAT1P21673 171 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PEX19P40855 299 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PKP1Q13835 747 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 TMCO4Q5TGY1 634 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 TTBK2Q6IQ55 1244 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 XAB2Q9HCS7 855 aaKnown RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PCDHA4Q9UN74 947 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 ENC1O14682 589 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PPIP5K2O43314 1243 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PFDN1O60925 122 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 CIAO1O76071 339 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PTPREP23469 700 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 RBL2Q08999 1139 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 RFX6Q8HWS3 928 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 CACTINQ8WUQ7 758 aaKnown RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 PPWD1Q96BP3 646 aaKnown RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 ANO3Q9BYT9 981 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 ATP8A1Q9Y2Q0 1164 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 ORC6Q9Y5N6 252 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 FRMPD2Q68DX3 1309 aaPredicted RBP14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 KIAA0556O60303 1618 aa14.33□□□□□ -0.12
CSPG4P11-201ENST00000560634 TLR3O15455 904 aaKnown RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 TTI1O43156 1089 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 DHX9Q08211 1270 aaKnown RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 NEK9Q8TD19 979 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 TMEM206Q9H813 350 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 PDE8BO95263 885 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 MT-ND3P03897 115 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 RSBN1LQ6PCB5 846 aaPredicted RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 LRRC47Q8N1G4 583 aaKnown RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 SCOCQ9UIL1 159 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 PCDHB4Q9Y5E5 795 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 MCF2LO15068 1137 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 GYG1P46976 350 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 NT5C2P49902 561 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 RCN2Q14257 317 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 DPCR1Q3MIW9 517 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 RAPH1Q70E73 1250 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 ACCSQ96QU6 501 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 DISC1Q9NRI5 854 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 CPP00450 1065 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 CCNE1P24864 410 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 CYP4A11Q02928 519 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 PSMD2Q13200 908 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 NSUN7Q8NE18 718 aaKnown RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 RWDD2AQ9UIY3 292 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 PTPN22Q9Y2R2 807 aa14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 THRAP3Q9Y2W1 955 aaKnown RBP14.32□□□□□ -0.12
CSPG4P11-201ENST00000560634 GOLGA8HP0CJ92 632 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 LINC00301Q8NCQ3 95 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 EIF2AQ9BY44 585 aaKnown RBP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZNF408Q9H9D4 720 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 TLK1Q9UKI8 766 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 CARMIL3Q8ND23 1372 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 BCAMP50895 628 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 SPOUT1Q5T280 376 aaKnown RBP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 EMBQ6PCB8 327 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 CXorf38Q8TB03 319 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 CCDC138Q96M89 665 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 FAM8A1Q9UBU6 413 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 NRBP1Q9UHY1 535 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 ANGPTL3Q9Y5C1 460 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 TMEM232C9JQI7 657 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 IPO5O00410 1097 aaKnown RBP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 BTDP43251 543 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 PANX2Q96RD6 677 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 NACC1Q96RE7 527 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 FGFR1OP2Q9NVK5 253 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 PACSIN2Q9UNF0 486 aaPredicted RBP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 RASGRF2O14827 1237 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 SLC7A3Q8WY07 619 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 THAP9Q9H5L6 903 aa14.31□□□□□ -0.12
CSPG4P11-201ENST00000560634 APOEP02649 317 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 NNTQ13423 1086 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms