RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 MOXD1Q6UVY6 613 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 RNF207Q6ZRF8 634 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 CCDC73Q6ZRK6 1079 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 FCHSD1Q86WN1 690 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 RIOX2Q8IUF8 465 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 PXYLP1Q8TE99 480 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 CCDC34Q96HJ3 373 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 MPHOSPH6Q99547 160 aaKnown RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 PAGR1Q9BTK6 254 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 ANO3Q9BYT9 981 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 RAB34Q9BZG1 259 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 SPATC1LQ9H0A9 340 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 HOMER2Q9NSB8 354 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 RNF146Q9NTX7 359 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 TMEM260Q9NX78 707 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 FAM13BQ9NYF5 915 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 ZNF214Q9UL59 606 aaPredicted RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 HTTP42858 3142 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 PFASO15067 1338 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 COL11A1P12107 1806 aaPredicted RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 RLFQ13129 1914 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 SMCHD1A6NHR9 2005 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 LOC102724159A0A0B4J2E5 919 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 TBC1D8O95759 1140 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 CYP3A4P08684 503 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 HOXC6P09630 235 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PTPREP23469 700 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 CMA1P23946 247 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 MARCKSP29966 332 aaPredicted RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 MAPK4P31152 587 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 HOXA13P31271 388 aaPredicted RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 SREBF1P36956 1147 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 TXLNAP40222 546 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PRPHP41219 470 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 ARHGAP4P98171 946 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 ATP2C1P98194 919 aaPredicted RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 GHRHRQ02643 423 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PTGDRQ13258 359 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PTPAQ15257 358 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PWP2Q15269 919 aaKnown RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 TMEM266Q2M3C6 531 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 XRRA1Q6P2D8 792 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 FBXO46Q6PJ61 603 aaPredicted RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 NSMFQ6X4W1 530 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 DTHD1Q6ZMT9 781 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 TRMT44Q8IYL2 757 aaKnown RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 ANKRD35Q8N283 1001 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PLCD3Q8N3E9 789 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 REPS2Q8NFH8 660 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 GPRC5AQ8NFJ5 357 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 SOCS4Q8WXH5 440 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 CLEC4DQ8WXI8 215 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 ARMC5Q96C12 935 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 CHAMP1Q96JM3 812 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PYM1Q9BRP8 204 aaKnown RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 FTOQ9C0B1 505 aaKnown RBP eCLIP7.29□□□□□ -1.24
SPG11-221ENST00000560299 MROH8Q9H579 483 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 PCDHA7Q9UN72 937 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 SRPRBQ9Y5M8 271 aaKnown RBP7.29□□□□□ -1.24
SPG11-221ENST00000560299 A0A0G2JMZ2 1700 aa7.29□□□□□ -1.24
SPG11-221ENST00000560299 CASP8AP2Q9UKL3 1982 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 CYP3A7-CYP3A51PA0A087WV96 503 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 FAM205CA6NFA0 338 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 NFIBO00712 420 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 OPLAHO14841 1288 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 TBX3O15119 743 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 LETM1O95202 739 aaPredicted RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 IGHA2P01877 340 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 OR52Z1P0C646 297 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 CYP3A7P24462 503 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 LONP1P36776 959 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 FCGRTP55899 365 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 RPS6P62753 249 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 ERVK-9P63128 1117 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 ERVK-24P63145 666 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 CALCRLQ16602 461 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 TPRNQ4KMQ1 711 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 MUM1L1Q5H9M0 696 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 ARHGEF16Q5VV41 709 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 NCAPG2Q86XI2 1143 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 SLFN12Q8IYM2 578 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 DNERQ8NFT8 737 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 NSUN6Q8TEA1 469 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 MRPS27Q92552 414 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 PGBD1Q96JS3 809 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 RMDN3Q96TC7 470 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 KRTAP3-3Q9BYR6 98 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 KRTAP3-2Q9BYR7 98 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 R3HDMLQ9H3Y0 253 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 EFCC1Q9HA90 598 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 RBPJLQ9UBG7 517 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 ADD3Q9UEY8 706 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 DDX25Q9UHL0 483 aaKnown RBP7.28□□□□□ -1.24
SPG11-221ENST00000560299 STK24Q9Y6E0 443 aa7.28□□□□□ -1.24
SPG11-221ENST00000560299 ZNF236Q9UL36 1845 aa7.27□□□□□ -1.25
SPG11-221ENST00000560299 MYH7BA7E2Y1 1941 aa7.27□□□□□ -1.25
SPG11-221ENST00000560299 VWA3AA6NCI4 1184 aa7.27□□□□□ -1.25
SPG11-221ENST00000560299 ADAMTS3O15072 1205 aa7.27□□□□□ -1.25
SPG11-221ENST00000560299 KINO60870 393 aaKnown RBP7.27□□□□□ -1.25
SPG11-221ENST00000560299 GADD45BO75293 160 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms