RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CDK5RAP3Q96JB5 506 aa14.26□□□□□ -0.13
USP3-213ENST00000559711 MED15Q96RN5 788 aa14.26□□□□□ -0.13
USP3-213ENST00000559711 TMOD4Q9NZQ9 345 aa14.26□□□□□ -0.13
USP3-213ENST00000559711 RABGAP1Q9Y3P9 1069 aa14.26□□□□□ -0.13
USP3-213ENST00000559711 ESPNB1AK53 854 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 NFIBO00712 420 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 ALAS1P13196 640 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 CD44P16070 742 aaKnown RBP14.25□□□□□ -0.13
USP3-213ENST00000559711 ZNF76P36508 570 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 IREB2P48200 963 aaKnown RBP14.25□□□□□ -0.13
USP3-213ENST00000559711 OAZ1P54368 228 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 ZNF658Q5TYW1 1059 aaPredicted RBP14.25□□□□□ -0.13
USP3-213ENST00000559711 SV2BQ7L1I2 683 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 CYP2W1Q8TAV3 490 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 TRIM9Q9C026 710 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 CTDP1Q9Y5B0 961 aaPredicted RBP14.25□□□□□ -0.13
USP3-213ENST00000559711 CSADQ9Y600 493 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 STK24Q9Y6E0 443 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 MYPNQ86TC9 1320 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 RPTORQ8N122 1335 aa14.25□□□□□ -0.13
USP3-213ENST00000559711 MYH7BA7E2Y1 1941 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 ATP2A1O14983 1001 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 RHOBTB3O94955 611 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 CEP55Q53EZ4 464 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 MUM1L1Q5H9M0 696 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 CNNM4Q6P4Q7 775 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 ZSCAN30Q86W11 494 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 RAD54LQ92698 747 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 CDCA5Q96FF9 252 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 NT5C3AQ9H0P0 336 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 TAF1DQ9H5J8 278 aaPredicted RBP14.24□□□□□ -0.13
USP3-213ENST00000559711 FANCLQ9NW38 375 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 KDM3AQ9Y4C1 1321 aa14.24□□□□□ -0.13
USP3-213ENST00000559711 IQCA1LA6NCM1 817 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 GOLGA6L6A8MZA4 724 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 MEIS1O00470 390 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 ZNF18P17022 549 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 ECM1Q16610 540 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 KMT5BQ4FZB7 885 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 SYTL5Q8TDW5 730 aaPredicted RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 LARP4BQ92615 738 aaKnown RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 WNK4Q96J92 1243 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 TRERF1Q96PN7 1200 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 GTPBP4Q9BZE4 634 aaKnown RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 LRRC27Q9C0I9 530 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 HOXC10Q9NYD6 342 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 COL20A1Q9P218 1284 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 VAV3Q9UKW4 847 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 POTECB2RU33 542 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 TPM3P06753 285 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 NF2P35240 595 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 CCT6AP40227 531 aaKnown RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 FANCCQ00597 558 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 PPATQ06203 517 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 SPATA1Q5VX52 437 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 KCNK18Q7Z418 384 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 SMYD4Q8IYR2 804 aaPredicted RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 FAM43AQ8N2R8 423 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 SLC5A5Q92911 643 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 MAF1Q9H063 256 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 ZNF214Q9UL59 606 aaPredicted RBP14.23□□□□□ -0.13
USP3-213ENST00000559711 NFE2L3Q9Y4A8 694 aa14.23□□□□□ -0.13
USP3-213ENST00000559711 FRMPD4Q14CM0 1322 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 PVALEFA0A1B0GWK0 134 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 ATP1A3P13637 1013 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 STAT3P40763 770 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 SETQ01105 290 aaPredicted RBP14.22□□□□□ -0.13
USP3-213ENST00000559711 MCM6Q14566 821 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 HAUS3Q68CZ6 603 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 NIPA1Q7RTP0 329 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 ANKRD13AQ8IZ07 590 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 SPC24Q8NBT2 197 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 GIMAP8Q8ND71 665 aaPredicted RBP14.22□□□□□ -0.13
USP3-213ENST00000559711 ERMNQ8TAM6 284 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 UIMC1Q96RL1 719 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 MXRA8Q9BRK3 442 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.22□□□□□ -0.13
USP3-213ENST00000559711 ZKSCAN5Q9Y2L8 839 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 RIPK3Q9Y572 518 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 SMCHD1A6NHR9 2005 aa14.22□□□□□ -0.13
USP3-213ENST00000559711 MYMKA6NI61 221 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 MED24O75448 989 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 PSMD10O75832 226 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 BCRP11274 1271 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 RPA1P27694 616 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 RPS6P62753 249 aaKnown RBP14.21□□□□□ -0.13
USP3-213ENST00000559711 UBXN2AP68543 259 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 TMEM132BQ14DG7 1078 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 TKFCQ3LXA3 575 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 OTOP1Q7RTM1 612 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 PNMA8AQ86V59 439 aaPredicted RBP14.21□□□□□ -0.13
USP3-213ENST00000559711 ERO1BQ86YB8 467 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 TRMT44Q8IYL2 757 aaKnown RBP14.21□□□□□ -0.13
USP3-213ENST00000559711 ADSSL1Q8N142 457 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 KCTD17Q8N5Z5 321 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 CCDC47Q96A33 483 aaKnown RBP14.21□□□□□ -0.13
USP3-213ENST00000559711 XPO4Q9C0E2 1151 aaKnown RBP14.21□□□□□ -0.13
USP3-213ENST00000559711 HOMER2Q9NSB8 354 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 IFNKQ9P0W0 207 aa14.21□□□□□ -0.13
USP3-213ENST00000559711 RWDD2AQ9UIY3 292 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms