RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 AFG1LQ8WV93 481 aa15.3■□□□□ 0.04
TPM1-220ENST00000559556 TAAR1Q96RJ0 339 aa15.3■□□□□ 0.04
TPM1-220ENST00000559556 CTAGE1Q96RT6 745 aa15.3■□□□□ 0.04
TPM1-220ENST00000559556 IWS1Q96ST2 819 aa15.3■□□□□ 0.04
TPM1-220ENST00000559556 ZSCAN10Q96SZ4 725 aaPredicted RBP15.3■□□□□ 0.04
TPM1-220ENST00000559556 RWDD1Q9H446 243 aaPredicted RBP15.3■□□□□ 0.04
TPM1-220ENST00000559556 DIAPH3Q9NSV4 1193 aa15.3■□□□□ 0.04
TPM1-220ENST00000559556 BAIAP3O94812 1187 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 GHRHRQ02643 423 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 RBL2Q08999 1139 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 STXBP2Q15833 593 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 LY6KQ17RY6 165 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 FBXO11Q86XK2 927 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 MCF2L2Q86YR7 1114 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 CCDC155Q8N6L0 562 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 RETREG2Q8NC44 543 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 ADAMTS19Q8TE59 1207 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 AFAP1L1Q8TED9 768 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 EMID1Q96A84 441 aaPredicted RBP15.29■□□□□ 0.04
TPM1-220ENST00000559556 RMDN3Q96TC7 470 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 JMJD4Q9H9V9 463 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 ZSWIM5Q9P217 1185 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 NOD1Q9Y239 953 aa15.29■□□□□ 0.04
TPM1-220ENST00000559556 MRPL11Q9Y3B7 192 aaKnown RBP15.29■□□□□ 0.04
TPM1-220ENST00000559556 TTC3P53804 2025 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 PARP1P09874 1014 aaKnown RBP15.28■□□□□ 0.04
TPM1-220ENST00000559556 PTGISQ16647 500 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 IMMTQ16891 758 aaKnown RBP15.28■□□□□ 0.04
TPM1-220ENST00000559556 GDF6Q6KF10 455 aaPredicted RBP15.28■□□□□ 0.04
TPM1-220ENST00000559556 SEPT14Q6ZU15 432 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 KAT2BQ92831 832 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 KRT23Q9C075 422 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 TSPYL2Q9H2G4 693 aaPredicted RBP15.28■□□□□ 0.04
TPM1-220ENST00000559556 CNNM2Q9H8M5 875 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 PXMP2Q9NR77 195 aa15.28■□□□□ 0.04
TPM1-220ENST00000559556 OPLAHO14841 1288 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 CASTP20810 708 aaKnown RBP15.27■□□□□ 0.04
TPM1-220ENST00000559556 HSD17B4P51659 736 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 DGKDQ16760 1214 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 HERC6Q8IVU3 1022 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 FTOQ9C0B1 505 aaKnown RBP eCLIP15.27■□□□□ 0.04
TPM1-220ENST00000559556 GTF2IRD1Q9UHL9 959 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 DDX41Q9UJV9 622 aaKnown RBP15.27■□□□□ 0.04
TPM1-220ENST00000559556 MTCH2Q9Y6C9 303 aa15.27■□□□□ 0.04
TPM1-220ENST00000559556 MUC6Q6W4X9 2439 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 EPOPA6NHQ4 379 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 DHX16O60231 1041 aaKnown RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 EIF3JO75822 258 aaKnown RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 ARHGEF15O94989 841 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 PARNO95453 639 aaKnown RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 F2P00734 622 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 IGHDP01880 384 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 EIF2AK2P19525 551 aaKnown RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 CHMP4BP1P59074 171 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 TAP1Q03518 808 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 ARHGEF16Q5VV41 709 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 CHST3Q7LGC8 479 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 MICALL1Q8N3F8 863 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 PPTC7Q8NI37 304 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 DHX38Q92620 1227 aaKnown RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 MTMR8Q96EF0 704 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 UHRF1Q96T88 793 aaPredicted RBP15.26■□□□□ 0.03
TPM1-220ENST00000559556 UBAC1Q9BSL1 405 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 CTNNA3Q9UI47 895 aa15.26■□□□□ 0.03
TPM1-220ENST00000559556 COL4A6Q14031 1691 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 HAS3O00219 553 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 GTPBP6O43824 516 aaPredicted RBP15.25■□□□□ 0.03
TPM1-220ENST00000559556 CFBP00751 764 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 CXCL10P02778 98 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 NR3C2P08235 984 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 HOXD8P13378 290 aaPredicted RBP15.25■□□□□ 0.03
TPM1-220ENST00000559556 SELPP16109 830 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 WDR5P61964 334 aaKnown RBP15.25■□□□□ 0.03
TPM1-220ENST00000559556 GPNMBQ14956 572 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 SEC23AQ15436 765 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 IFIT1BQ5T764 474 aaKnown RBP15.25■□□□□ 0.03
TPM1-220ENST00000559556 LRRC8DQ7L1W4 858 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 STAG2Q8N3U4 1231 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 IL27Q8NEV9 243 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 KATNAL1Q9BW62 490 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 AMNQ9BXJ7 453 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 IL25Q9H293 177 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 MAP3K20Q9NYL2 800 aaKnown RBP15.25■□□□□ 0.03
TPM1-220ENST00000559556 MRVI1Q9Y6F6 885 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 PIEZO1Q92508 2521 aa15.25■□□□□ 0.03
TPM1-220ENST00000559556 KIF28PB7ZC32 967 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 KLRF2D3W0D1 207 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 RFXAPO00287 272 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 PPP1R11O60927 126 aaPredicted RBP15.24■□□□□ 0.03
TPM1-220ENST00000559556 ZNF286BP0CG31 522 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 CKBP12277 381 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 KCNJ6P48051 423 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 PSEN2P49810 448 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 TFF2Q03403 129 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 LAMC2Q13753 1193 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 AAK1Q2M2I8 961 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 CNKSR3Q6P9H4 555 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 STOX1Q6ZVD7 989 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 SAMD3Q8N6K7 520 aa15.24■□□□□ 0.03
TPM1-220ENST00000559556 PDCD2LQ9BRP1 358 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms