RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 GRIN2DO15399 1336 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 KLF18A0A0U1RQI7 1052 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 GOLGA8AA7E2F4 631 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 GOLGA8BA8MQT2 603 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 DCDC2CA8MYV0 355 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 SOX1O00570 391 aaPredicted RBP12.64□□□□□ -0.39
SPG11-216ENST00000559347 ZBTB43O43298 467 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 RCAN1P53805 252 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 ARHGAP1Q07960 439 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 SYNE3Q6ZMZ3 975 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 SEPT14Q6ZU15 432 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 BADQ92934 168 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 VTI1AQ96AJ9 217 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 POLR3EQ9NVU0 708 aa12.64□□□□□ -0.39
SPG11-216ENST00000559347 RBM28Q9NW13 759 aaKnown RBP12.64□□□□□ -0.39
SPG11-216ENST00000559347 SCN5AQ14524 2016 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 hCG_1642624A0A1W2PR95 340 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 A6NJR5 290 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 PIK3CDO00329 1044 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 EIF3JO75822 258 aaKnown RBP12.63□□□□□ -0.39
SPG11-216ENST00000559347 RGS20O76081 388 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 GH1P01241 217 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 CD4P01730 458 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 MYCLP12524 364 aaPredicted RBP12.63□□□□□ -0.39
SPG11-216ENST00000559347 CCND2P30279 289 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 PSMC6P62333 389 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 FUT2Q10981 343 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 ITGA7Q13683 1181 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 RTN1Q16799 776 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 LY6KQ17RY6 165 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 BLOC1S2Q6QNY1 142 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 FCHSD1Q86WN1 690 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 CCDC82Q8N4S0 544 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 TMEM39AQ9NV64 488 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 MRVI1Q9Y6F6 885 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 GBF1Q92538 1859 aa12.63□□□□□ -0.39
SPG11-216ENST00000559347 MEIS2O14770 477 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 TLR3O15455 904 aaKnown RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 MMP3P08254 477 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 MYL3P08590 195 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 RAG1P15918 1043 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 CASTP20810 708 aaKnown RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 RPS6KB1P23443 525 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 LRIT3Q3SXY7 679 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 BRDTQ58F21 947 aaPredicted RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 USP17L6PQ6QN14 398 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 Q6ZUG5 572 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 VSIG10LQ86VR7 867 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 FBXL16Q8N461 479 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 SMARCC2Q8TAQ2 1214 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 GPKOWQ92917 476 aaPredicted RBP eCLIP12.62□□□□□ -0.39
SPG11-216ENST00000559347 BRF1Q92994 677 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 EMID1Q96A84 441 aaPredicted RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 MTG1Q9BT17 334 aaPredicted RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 SEZ6LQ9BYH1 1024 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 AGXT2Q9BYV1 514 aa12.62□□□□□ -0.39
SPG11-216ENST00000559347 FAM217BQ9NTX9 383 aaPredicted RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 DDX41Q9UJV9 622 aaKnown RBP12.62□□□□□ -0.39
SPG11-216ENST00000559347 COL6A3P12111 3177 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 B4GALT4O60513 344 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 PSMA5P28066 241 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 CDC27P30260 824 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 METAP2P50579 478 aaKnown RBP eCLIP12.61□□□□□ -0.39
SPG11-216ENST00000559347 MRPS9P82933 396 aaKnown RBP12.61□□□□□ -0.39
SPG11-216ENST00000559347 FGD1P98174 961 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 WWC2Q6AWC2 1192 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 HEATR3Q7Z4Q2 680 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 AFG1LQ8WV93 481 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 CUL5Q93034 780 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 LRCH3Q96II8 777 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 INPP4AQ96PE3 977 aaPredicted RBP12.61□□□□□ -0.39
SPG11-216ENST00000559347 USP26Q9BXU7 913 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 CDH23Q9H251 3354 aa12.61□□□□□ -0.39
SPG11-216ENST00000559347 TRIP12Q14669 1992 aaPredicted RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 hCG_1984214I3L0E3 225 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 KPNA6O60684 536 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 STAM2O75886 525 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 TIMP1P01033 207 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 UBA1P22314 1058 aaKnown RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 FPGSQ05932 587 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 UBE2SQ16763 222 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 C9orf50Q5SZB4 431 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 TYW1BQ6NUM6 668 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 PPP1R18Q6NYC8 613 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 KCNV1Q6PIU1 500 aa12.6□□□□□ -0.39
SPG11-216ENST00000559347 ZNF713Q8N859 430 aaPredicted RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 ZFP91Q96JP5 570 aaPredicted RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 ALDH8A1Q9H2A2 487 aaPredicted RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 NAP1L2Q9ULW6 460 aaPredicted RBP12.6□□□□□ -0.39
SPG11-216ENST00000559347 CHD9Q3L8U1 2897 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 HOXD8P13378 290 aaPredicted RBP12.59□□□□□ -0.39
SPG11-216ENST00000559347 EPHB4P54760 987 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 NAPAP54920 295 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 GNPTABQ3T906 1256 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 PCNX4Q63HM2 1172 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 MFSD5Q6N075 450 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 NFRKBQ6P4R8 1299 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 RUFY3Q7L099 469 aa12.59□□□□□ -0.39
SPG11-216ENST00000559347 PPTC7Q8NI37 304 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms