RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 M0R2N6 131 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 HMGCRP04035 888 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 GCFC2P16383 781 aaKnown RBP10.51□□□□□ -0.73
LDLR-210ENST00000559340 GRK4P32298 578 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 ARHGAP4P98171 946 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 ORC2Q13416 577 aaPredicted RBP10.51□□□□□ -0.73
LDLR-210ENST00000559340 NPY5RQ15761 445 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 MOXD1Q6UVY6 613 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 PIK3AP1Q6ZUJ8 805 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 ARMCX2Q7L311 632 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 NEK8Q86SG6 692 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 NOSTRINQ8IVI9 506 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 RASGRP4Q8TDF6 673 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.51□□□□□ -0.73
LDLR-210ENST00000559340 COL20A1Q9P218 1284 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 CIZ1Q9ULV3 898 aaPredicted RBP10.51□□□□□ -0.73
LDLR-210ENST00000559340 ATP6V1DQ9Y5K8 247 aa10.51□□□□□ -0.73
LDLR-210ENST00000559340 TGFB3P10600 412 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 EDNRBP24530 442 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 NR5A1Q13285 461 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 INF2Q27J81 1249 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 SLC9C1Q4G0N8 1177 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 RILPL1Q5EBL4 403 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 IQSEC1Q6DN90 963 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 NIPA1Q7RTP0 329 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 OXER1Q8TDS5 423 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 TBCKQ8TEA7 893 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 SHISA4Q96DD7 197 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 MTMR6Q9Y217 621 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 PTCH2Q9Y6C5 1203 aa10.5□□□□□ -0.73
LDLR-210ENST00000559340 WDR81Q562E7 1941 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 NKRFO15226 690 aaKnown RBP eCLIP10.49□□□□□ -0.73
LDLR-210ENST00000559340 MARCH6O60337 910 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 BAG4O95429 457 aaKnown RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 BMP15O95972 392 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 ZSCAN22P10073 491 aaPredicted RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 CAPN2P17655 700 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 CIITAP33076 1130 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 SETQ01105 290 aaPredicted RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 ACVR2BQ13705 512 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 TTLL4Q14679 1199 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 CEP55Q53EZ4 464 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 GIMAP8Q8ND71 665 aaPredicted RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 SCFD2Q8WU76 684 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 TRIB2Q92519 343 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 TNFRSF25Q93038 417 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 GPRASP2Q96D09 838 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 PGBD1Q96JS3 809 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 FGD4Q96M96 766 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 ZNF396Q96N95 335 aaPredicted RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 PURBQ96QR8 312 aaKnown RBP10.49□□□□□ -0.73
LDLR-210ENST00000559340 MXRA8Q9BRK3 442 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 JADE2Q9NQC1 790 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 TCEAL9Q9UHQ7 104 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 FAM184BQ9ULE4 1060 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 CEP131Q9UPN4 1083 aa10.49□□□□□ -0.73
LDLR-210ENST00000559340 CYP3A7-CYP3A51PA0A087WV96 503 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 FIBPO43427 364 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 MSCO60682 206 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 SNAI1O95863 264 aaPredicted RBP10.48□□□□□ -0.73
LDLR-210ENST00000559340 ELNP15502 786 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 CYP3A7P24462 503 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 ICAM3P32942 547 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 CYP2C19P33261 490 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 CAP1Q01518 475 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 CCL14Q16627 93 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 LETM2Q2VYF4 491 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 ATL3Q6DD88 541 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 PPP4R3AQ6IN85 833 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 SEPT14Q6ZU15 432 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 PLA2G4DQ86XP0 818 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 HMX1Q9NP08 348 aaPredicted RBP10.48□□□□□ -0.73
LDLR-210ENST00000559340 CHMP5Q9NZZ3 219 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 ZHX1Q9UKY1 873 aaPredicted RBP10.48□□□□□ -0.73
LDLR-210ENST00000559340 UBIAD1Q9Y5Z9 338 aa10.48□□□□□ -0.73
LDLR-210ENST00000559340 KIAA0100Q14667 2235 aaKnown RBP10.48□□□□□ -0.73
LDLR-210ENST00000559340 DOCK5Q9H7D0 1870 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 RBM47A0AV96 593 aaKnown RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 MEIS1O00470 390 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 TBX3O15119 743 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 CCNT1O60563 726 aaKnown RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 BRD1O95696 1058 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 F13A1P00488 732 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 IGHA2P01877 340 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 INHAP05111 366 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 PRKAR2AP13861 404 aaKnown RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 AKR1A1P14550 325 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 ATP2B1P20020 1258 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 CNGA1P29973 690 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 MRPS9P82933 396 aaKnown RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 CACNB2Q08289 660 aaPredicted RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 MTMR1Q13613 665 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 NEDD9Q14511 834 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 Q4G0T1 1027 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 BRDTQ58F21 947 aaPredicted RBP10.47□□□□□ -0.73
LDLR-210ENST00000559340 TTC38Q5R3I4 469 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 FERMT3Q86UX7 667 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 CRYGNQ8WXF5 182 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 FAM20AQ96MK3 541 aa10.47□□□□□ -0.73
LDLR-210ENST00000559340 INPP4AQ96PE3 977 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms