RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TTLL6Q8N841 843 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 NPLOC4Q8TAT6 608 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 LGR4Q9BXB1 951 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 LRP2BPQ9P2M1 347 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 MYO1BO43795 1136 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 ITGB3P05106 788 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 INSRRP14616 1297 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 FPR2P25090 351 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 RPL13P26373 211 aaKnown RBP7.65□□□□□ -1.18
VPS13C-208ENST00000559119 SLC6A11P48066 632 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 GTF2A2P52657 109 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 KIAA2012Q0VF49 1180 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 RGL3Q3MIN7 710 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 E4F1Q66K89 784 aaPredicted RBP7.65□□□□□ -1.18
VPS13C-208ENST00000559119 CEP68Q76N32 757 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 FAM26EQ8N5C1 309 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 BTN2A2Q8WVV5 523 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 DIO2Q92813 273 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 TRMT2BQ96GJ1 504 aaKnown RBP7.65□□□□□ -1.18
VPS13C-208ENST00000559119 YIPF4Q9BSR8 244 aa7.65□□□□□ -1.18
VPS13C-208ENST00000559119 SNRPB2P08579 225 aaKnown RBP7.64□□□□□ -1.19
VPS13C-208ENST00000559119 HOXC12P31275 282 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 ECI1P42126 302 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 MAGEA10P43363 369 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-208ENST00000559119 SV2CQ496J9 727 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 STK32CQ86UX6 486 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 FAM124AQ86V42 546 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 RIOX2Q8IUF8 465 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 SYT3Q9BQG1 590 aa7.64□□□□□ -1.19
VPS13C-208ENST00000559119 NGRNQ9NPE2 291 aaKnown RBP7.64□□□□□ -1.19
VPS13C-208ENST00000559119 COA3Q9Y2R0 106 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-208ENST00000559119 MEFVO15553 781 aaPredicted RBP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 ATF4P18848 351 aaPredicted RBP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 BCL6P41182 706 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 KCNAB2Q13303 367 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 PUM1Q14671 1186 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 FAM26FQ5R3K3 315 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 LARP1BQ659C4 914 aaKnown RBP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 C6orf15Q6UXA7 325 aaPredicted RBP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 FAM126BQ8IXS8 530 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 TMEM169Q96HH4 297 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 CAPN10Q9HC96 672 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 SMPD4Q9NXE4 827 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 ACTR10Q9NZ32 417 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 KIAA1522Q9P206 1035 aaPredicted RBP7.63□□□□□ -1.19
VPS13C-208ENST00000559119 MYRFQ9Y2G1 1151 aa7.63□□□□□ -1.19
VPS13C-208ENST00000559119 SMAD7O15105 426 aaKnown RBP7.62□□□□□ -1.19
VPS13C-208ENST00000559119 SSBP05455 408 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS13C-208ENST00000559119 STAT5AP42229 794 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 ITGA1P56199 1179 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 CYP4F3Q08477 520 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 TNNI3KQ59H18 835 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 MCTP2Q6DN12 878 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 BORAQ6PGQ7 559 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 VPS37DQ86XT2 251 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 FAM178BQ8IXR5 827 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 LGI4Q8N135 537 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 MRVI1Q9Y6F6 885 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 X6R8D5 127 aa7.62□□□□□ -1.19
VPS13C-208ENST00000559119 MROH6A6NGR9 719 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 ITGAVP06756 1048 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 KCNJ6P48051 423 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 NKX3-2P78367 333 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 CHRNA2Q15822 529 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 ZNF227Q86WZ6 799 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 CCDC103Q8IW40 242 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 CHAMP1Q96JM3 812 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 CCDC140Q96MF4 163 aa7.61□□□□□ -1.19
VPS13C-208ENST00000559119 TMEFF2Q9UIK5 374 aaPredicted RBP7.61□□□□□ -1.19
VPS13C-208ENST00000559119 TBX1O43435 398 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 CPP00450 1065 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 PLATP00750 562 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 ADAM17P78536 824 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 NLRP10Q86W26 655 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 Q8N1Y9 231 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 LOXL4Q96JB6 756 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 RBM15Q96T37 977 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS13C-208ENST00000559119 TMPRSS5Q9H3S3 457 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 INVSQ9Y283 1065 aa7.6□□□□□ -1.19
VPS13C-208ENST00000559119 ZNF536O15090 1300 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 B2RBV5 119 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 DDX3XO00571 662 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13C-208ENST00000559119 SUSD5O60279 629 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 DDAH1O94760 285 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 SCG5P05408 212 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 TBC1D10BQ4KMP7 808 aaPredicted RBP7.59□□□□□ -1.19
VPS13C-208ENST00000559119 ACBD5Q5T8D3 534 aaPredicted RBP7.59□□□□□ -1.19
VPS13C-208ENST00000559119 PRAMEF18Q5VWM3 479 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 PPIL6Q8IXY8 311 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 TXNDC5Q8NBS9 432 aaKnown RBP7.59□□□□□ -1.19
VPS13C-208ENST00000559119 ZNF652Q9Y2D9 606 aa7.59□□□□□ -1.19
VPS13C-208ENST00000559119 H7BY64 318 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 HGSO14964 777 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-208ENST00000559119 LTBRP36941 435 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 PRSS53Q2L4Q9 553 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 KREMEN2Q8NCW0 462 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 RCBTB1Q8NDN9 531 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 LCORQ96JN0 433 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-208ENST00000559119 SAMD11Q96NU1 681 aa7.58□□□□□ -1.2
VPS13C-208ENST00000559119 PCDHA2Q9Y5H9 948 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms