RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ARNTLO00327 626 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 NAT2P11245 290 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 FPR2P25090 351 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 SLC6A11P48066 632 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 ADAM17P78536 824 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 PPP1R14AQ96A00 147 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 ANAPC16Q96DE5 110 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 SMPD4Q9NXE4 827 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 STRIP2Q9ULQ0 834 aa6.3□□□□□ -1.4
SCFD1-219ENST00000556413 PLATP00750 562 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 ITGA1P56199 1179 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 TBC1D10BQ4KMP7 808 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-219ENST00000556413 FAM26FQ5R3K3 315 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 PRR31Q5SQ13 230 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 IQCEQ6IPM2 695 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 MILR1Q7Z6M3 343 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 RIOX2Q8IUF8 465 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 CCDC103Q8IW40 242 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 TTLL6Q8N841 843 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 BTN2A2Q8WVV5 523 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 MRRFQ96E11 262 aaKnown RBP6.29□□□□□ -1.4
SCFD1-219ENST00000556413 ACBD3Q9H3P7 528 aa6.29□□□□□ -1.4
SCFD1-219ENST00000556413 TMEFF2Q9UIK5 374 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-219ENST00000556413 TIMM13Q9Y5L4 95 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-219ENST00000556413 TBX1O43435 398 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 RPL11P62913 178 aaKnown RBP6.28□□□□□ -1.4
SCFD1-219ENST00000556413 KIAA2012Q0VF49 1180 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 MROH9Q5TGP6 573 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 MCTP2Q6DN12 878 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 CEP68Q76N32 757 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 ZC3H18Q86VM9 953 aaKnown RBP6.28□□□□□ -1.4
SCFD1-219ENST00000556413 NLRP10Q86W26 655 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 FAM126BQ8IXS8 530 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 Q8N1Y9 231 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 KRTAP3-1Q9BYR8 98 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 TGIF2Q9GZN2 237 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 INVSQ9Y283 1065 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 INPP5FQ9Y2H2 1132 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 X6R8D5 127 aa6.28□□□□□ -1.4
SCFD1-219ENST00000556413 MROH6A6NGR9 719 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 DDX3XO00571 662 aaKnown RBP eCLIP6.27□□□□□ -1.412e-7■□□□□ 8.1
SCFD1-219ENST00000556413 BCL6P41182 706 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 STAT5AP42229 794 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 CR1LQ2VPA4 569 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 E4F1Q66K89 784 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-219ENST00000556413 LGI4Q8N135 537 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 TXNDC5Q8NBS9 432 aaKnown RBP6.27□□□□□ -1.41
SCFD1-219ENST00000556413 DIO2Q92813 273 aa6.27□□□□□ -1.41
SCFD1-219ENST00000556413 ITGAVP06756 1048 aa6.26□□□□□ -1.41
SCFD1-219ENST00000556413 HOXC12P31275 282 aa6.26□□□□□ -1.41
SCFD1-219ENST00000556413 C6orf15Q6UXA7 325 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-219ENST00000556413 KREMEN2Q8NCW0 462 aa6.26□□□□□ -1.41
SCFD1-219ENST00000556413 TRMT2BQ96GJ1 504 aaKnown RBP6.26□□□□□ -1.41
SCFD1-219ENST00000556413 SAMD11Q96NU1 681 aa6.26□□□□□ -1.41
SCFD1-219ENST00000556413 SSBP3Q9BWW4 388 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-219ENST00000556413 KIAA1522Q9P206 1035 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-219ENST00000556413 FBXL7Q9UJT9 491 aa6.26□□□□□ -1.41
SCFD1-219ENST00000556413 SCG5P05408 212 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 SNRPB2P08579 225 aaKnown RBP6.25□□□□□ -1.41
SCFD1-219ENST00000556413 ATF4P18848 351 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-219ENST00000556413 TNFRSF1AP19438 455 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 ECI1P42126 302 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 GTF2A2P52657 109 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 ADAM9Q13443 819 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 CPZQ66K79 652 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 BORAQ6PGQ7 559 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 FAM124AQ86V42 546 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 ZNF227Q86WZ6 799 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 TTC9BQ8N6N2 239 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 RCBTB1Q8NDN9 531 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 TMEM169Q96HH4 297 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 LOXL4Q96JB6 756 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 C8orf49Q96NF6 230 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 C1QTNF3Q9BXJ4 246 aa6.25□□□□□ -1.41
SCFD1-219ENST00000556413 NGRNQ9NPE2 291 aaKnown RBP6.25□□□□□ -1.41
SCFD1-219ENST00000556413 SMAD7O15105 426 aaKnown RBP6.24□□□□□ -1.41
SCFD1-219ENST00000556413 MEFVO15553 781 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-219ENST00000556413 MYO1BO43795 1136 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 NKX3-2P78367 333 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 KCNAB2Q13303 367 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 TESK1Q15569 626 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 SF1Q15637 639 aaKnown RBP6.24□□□□□ -1.41
SCFD1-219ENST00000556413 PRSS53Q2L4Q9 553 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 SV2CQ496J9 727 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 ACBD5Q5T8D3 534 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-219ENST00000556413 FAM178BQ8IXR5 827 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 CCSER2Q9H7U1 834 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 ZNF652Q9Y2D9 606 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 MRVI1Q9Y6F6 885 aa6.24□□□□□ -1.41
SCFD1-219ENST00000556413 B2RBV5 119 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 C1QTNF3-AMACRE9PGA6 284 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 MATN3O15232 486 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 ZNF20P17024 532 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 ZNF28P17035 718 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 ARRDC4Q8NCT1 418 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 LCORQ96JN0 433 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-219ENST00000556413 YIPF4Q9BSR8 244 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 ACTR10Q9NZ32 417 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 LRP2BPQ9P2M1 347 aa6.23□□□□□ -1.41
SCFD1-219ENST00000556413 COA3Q9Y2R0 106 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms