RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CSRNP1Q96S65 589 aa16.41■□□□□ 0.22
CUX1-215ENST00000556210 NUP58Q9BVL2 599 aa16.41■□□□□ 0.22
CUX1-215ENST00000556210 TLDC2A0PJX2 215 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 LGALS16A8MUM7 142 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 STXBP3O00186 592 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 TBC1D8O95759 1140 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 ERVK-24P63145 666 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 IFFO1Q0D2I5 559 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 DNAAF5Q86Y56 855 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 TBC1D5Q92609 795 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 MNAT1P51948 309 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 MDM2Q00987 491 aaPredicted RBP16.4■□□□□ 0.22
CUX1-215ENST00000556210 NFIAQ12857 509 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 RCSD1Q6JBY9 416 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 ZNF384Q8TF68 577 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 H0YIN7 160 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 MAP3K9P80192 1104 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 GFPT1Q06210 699 aaPredicted RBP16.4■□□□□ 0.22
CUX1-215ENST00000556210 HS2ST1Q7LGA3 356 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 DHTKD1Q96HY7 919 aaPredicted RBP16.4■□□□□ 0.22
CUX1-215ENST00000556210 POLLQ9UGP5 575 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 ANAPC4Q9UJX5 808 aa16.4■□□□□ 0.22
CUX1-215ENST00000556210 GH2P01242 217 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 TUBBP07437 444 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 TRIM65Q6PJ69 517 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 NOX5Q96PH1 765 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 NSMFQ6X4W1 530 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 FBXO11Q86XK2 927 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 ADSSL1Q8N142 457 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 LARGE2Q8N3Y3 721 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 BHMT2Q9H2M3 363 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 FAM204AQ9H8W3 233 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 SRCAPQ6ZRS2 3230 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 KRT13P13646 458 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 ATP1A2P50993 1020 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 VSNL1P62760 191 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 SLIT3O75094 1523 aa16.39■□□□□ 0.21
CUX1-215ENST00000556210 LRRC53A6NM62 1247 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 EBAG9O00559 213 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 SLC37A4O43826 429 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 EEF2P13639 858 aaKnown RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 CTTNQ14247 550 aaKnown RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 ASIC2Q16515 512 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 IL17AQ16552 155 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 ABCB5Q2M3G0 1257 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 RNF187Q5TA31 235 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 RIN2Q8WYP3 895 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 EHD2Q9NZN4 543 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 ESYT3A0FGR9 886 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 MYMKA6NI61 221 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 KCNK3O14649 394 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 HSF2BPO75031 334 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 ZNF18P17022 549 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 TUBB2AQ13885 445 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 CASP8Q14790 479 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 CDC37Q16543 378 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 GALNT17Q6IS24 598 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 TUBB2BQ9BVA1 445 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 ARMCX3Q9UH62 379 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 RNF225M0QZC1 329 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 RDXP35241 583 aaKnown RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 KIF11P52732 1056 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 IRX3P78415 501 aaPredicted RBP16.38■□□□□ 0.21
CUX1-215ENST00000556210 FAM76AQ8TAV0 307 aa16.38■□□□□ 0.21
CUX1-215ENST00000556210 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.38■□□□□ 0.218e-7■■■■■ 65.6
CUX1-215ENST00000556210 PLA2G4BP0C869 781 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 HARSP12081 509 aaKnown RBP16.37■□□□□ 0.21
CUX1-215ENST00000556210 WHAMMP3Q1A5X7 153 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 HAUS3Q68CZ6 603 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 HSD3B7Q9H2F3 369 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 KCNQ5Q9NR82 932 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 VAV2P52735 878 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 ZBED6P86452 979 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 APBA1Q02410 837 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 U2AF1L4Q8WU68 220 aaKnown RBP16.37■□□□□ 0.21
CUX1-215ENST00000556210 MTA3Q9BTC8 594 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 FEZ2Q9UHY8 353 aaPredicted RBP16.37■□□□□ 0.21
CUX1-215ENST00000556210 LRRN2O75325 713 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 CHRNA5P30532 468 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 RCAN1P53805 252 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 TNIP1Q15025 636 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 ASPRV1Q53RT3 343 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 CCDC93Q567U6 631 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 NFRKBQ6P4R8 1299 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 AMIGO3Q86WK7 504 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 BICD1Q96G01 975 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 GOLPH3Q9H4A6 298 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 MTMR4Q9NYA4 1195 aa16.37■□□□□ 0.21
CUX1-215ENST00000556210 CCDC169A6NNP5 214 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 EXOC3O60645 756 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 SASH3O75995 380 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 PDHBP11177 359 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 SARSP49591 514 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 FKBP3Q00688 224 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 QRICH1Q2TAL8 776 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 KSR1Q8IVT5 923 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 UHMK1Q8TAS1 419 aaKnown RBP16.36■□□□□ 0.21
CUX1-215ENST00000556210 AK8Q96MA6 479 aa16.36■□□□□ 0.21
CUX1-215ENST00000556210 EMILIN3Q9NT22 766 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms