RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 MED15Q96RN5 788 aa16.53■□□□□ 0.24
VPS33B-205ENST00000556096 EHMT1Q9H9B1 1298 aa16.53■□□□□ 0.24
VPS33B-205ENST00000556096 IFNKQ9P0W0 207 aa16.53■□□□□ 0.24
VPS33B-205ENST00000556096 NFE2L3Q9Y4A8 694 aa16.53■□□□□ 0.24
VPS33B-205ENST00000556096 ZNF536O15090 1300 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 POTEMA6NI47 508 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 CBFA2T2O43439 604 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 KLRC4O43908 158 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 RHOBTB3O94955 611 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 CFBP00751 764 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 ZNF18P17022 549 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 NF2P35240 595 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 BACE1P56817 501 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 SPP2Q13103 211 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 MTMR2Q13614 643 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 TMEM119Q4V9L6 283 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 SPATA1Q5VX52 437 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 CCDC186Q7Z3E2 898 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 SAMD3Q8N6K7 520 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 ZNF280CQ8ND82 737 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 SNX29Q8TEQ0 813 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 LENG9Q96B70 501 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 CDK5RAP3Q96JB5 506 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 XPO4Q9C0E2 1151 aaKnown RBP16.52■□□□□ 0.24
VPS33B-205ENST00000556096 GBA2Q9HCG7 927 aaPredicted RBP16.52■□□□□ 0.24
VPS33B-205ENST00000556096 BLOC1S4Q9NUP1 217 aa16.52■□□□□ 0.24
VPS33B-205ENST00000556096 C19orf81C9J6K1 198 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 ATP1A3P13637 1013 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 VCAM1P19320 739 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 GHRHRQ02643 423 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 SV2BQ7L1I2 683 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS33B-205ENST00000556096 TBC1D5Q92609 795 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 C12orf42Q96LP6 360 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 TRIM9Q9C026 710 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 LRRC27Q9C0I9 530 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 SLC38A10Q9HBR0 1119 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 IMPACTQ9P2X3 320 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 CCPG1Q9ULG6 757 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 PPP1R9AQ9ULJ8 1098 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 ABT1Q9ULW3 272 aaKnown RBP16.51■□□□□ 0.23
VPS33B-205ENST00000556096 STK24Q9Y6E0 443 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 KDM3AQ9Y4C1 1321 aa16.51■□□□□ 0.23
VPS33B-205ENST00000556096 FAM86B1E9PN63 330 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 FAM86B2P0C5J1 330 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 KMT5BQ4FZB7 885 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 PRR16Q569H4 304 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 CNNM4Q6P4Q7 775 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 FCHSD1Q86WN1 690 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 CCDC47Q96A33 483 aaKnown RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 ZNF830Q96NB3 372 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 NT5C3AQ9H0P0 336 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 NRBP1Q9UHY1 535 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 SMCHD1A6NHR9 2005 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 PPP1R12BO60237 982 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 SERPINC1P01008 464 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 PTGS1P23219 599 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 HSD17B4P51659 736 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 APLP1P51693 650 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 UBASH3AP57075 661 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 TRMT44Q8IYL2 757 aaKnown RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 LARP4BQ92615 738 aaKnown RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 RAD54LQ92698 747 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 AGBL1Q96MI9 1066 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 NUDT12Q9BQG2 462 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 TANGO6Q9C0B7 1094 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 KCNF1Q9H3M0 494 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 RPAP3Q9H6T3 665 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 MAP3K20Q9NYL2 800 aaKnown RBP16.5■□□□□ 0.23
VPS33B-205ENST00000556096 RWDD2AQ9UIY3 292 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 RABGAP1Q9Y3P9 1069 aa16.5■□□□□ 0.23
VPS33B-205ENST00000556096 SYNRGQ9UMZ2 1314 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 TMEM88BA6NKF7 163 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 FLOT1O75955 427 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 HOXA7P31268 230 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-205ENST00000556096 ZNF76P36508 570 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-205ENST00000556096 MCF2L2Q86YR7 1114 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 SMYD4Q8IYR2 804 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-205ENST00000556096 C2orf69Q8N8R5 385 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 GIMAP8Q8ND71 665 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-205ENST00000556096 CLEC4DQ8WXI8 215 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 CLMNQ96JQ2 1002 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 PTPRFP10586 1907 aa16.49■□□□□ 0.23
VPS33B-205ENST00000556096 IGLV3-22A0A075B6J6 115 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 PVALEFA0A1B0GWK0 134 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 MSH4O15457 936 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 ZBED4O75132 1171 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 MAP3K9P80192 1104 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 SPIRE1Q08AE8 756 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 GRM1Q13255 1194 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 VGLL4Q14135 290 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 DHX8Q14562 1220 aaKnown RBP16.48■□□□□ 0.23
VPS33B-205ENST00000556096 CCDC144BQ3MJ40 725 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 KLHL10Q6JEL2 608 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.48■□□□□ 0.23
VPS33B-205ENST00000556096 ADSSL1Q8N142 457 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 GJA10Q969M2 543 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 ZHX2Q9Y6X8 837 aa16.48■□□□□ 0.23
VPS33B-205ENST00000556096 CDK11BP21127 795 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms